Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011934.1 Corchorus olitorius cultivar O-4 contig11967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69003

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--42
2
21.0
2
100
0
84
0
50
0
50
1.00
3993--4038
21
2.3
19
88
7
65
0
15
0
84
0.62
3991--4035
15
3.1
15
90
3
65
0
17
0
82
0.68
5187--5221
18
1.9
18
88
0
52
25
5
31
37
1.80
10064--10159
36
2.9
31
80
14
120
34
23
7
34
1.83
12163--12208
22
2.0
24
87
12
69
69
0
4
26
1.07
16101--16126
2
13.0
2
100
0
52
50
50
0
0
1.00
16123--16163
21
2.0
21
95
0
73
48
17
14
19
1.81
40386--40415
3
10.0
3
100
0
60
0
33
33
33
1.58
40767--40804
5
7.6
5
100
0
76
78
0
21
0
0.74
44079--44125
12
3.8
12
88
2
67
38
10
23
27
1.88
45282--45313
12
2.7
12
100
0
64
53
31
15
0
1.43
45624--45667
10
4.4
10
88
0
61
34
4
15
45
1.67
45619--45667
20
2.5
20
82
0
62
34
4
16
44
1.66
53823--53868
20
2.2
21
88
3
67
26
10
2
60
1.41
54028--54071
22
2.1
21
87
8
63
27
15
0
56
1.40
54041--55105
26
39.3
26
68
20
412
29
21
1
48
1.58
54070--54215
71
2.0
73
82
5
181
28
24
1
45
1.62
54131--54504
54
6.9
55
84
6
437
32
21
0
45
1.58
54131--54458
109
3.0
107
91
2
489
32
21
0
45
1.58
54472--55086
60
10.9
59
82
11
669
29
20
1
49
1.56
54593--55138
51
10.1
51
82
8
527
27
20
1
50
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54411--55105
224
3.1
224
78
14
687
28
20
1
49
1.56
54429--55086
337
2.0
334
92
1
1084
28
20
1
49
1.56
58959--58994
18
2.1
18
89
5
56
33
11
11
44
1.75
62787--62842
26
2.1
28
90
6
89
53
10
8
26
1.65
66155--66279
65
2.0
62
87
4
178
39
15
23
22
1.92
67141--67179
2
19.5
2
100
0
78
51
0
0
48
1.00

Tables:   1

The End!