genome.fa.s12058.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012058.1 Corchorus olitorius cultivar O-4 contig12091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62561

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2439--2477	18	2.3	17	91	8	62	38	5	10	46	1.60
2439--2487	18	2.8	18	82	11	50	38	8	10	42	1.68
3251--3305	21	2.6	21	88	0	74	10	25	50	12	1.73
6199--6260	24	2.7	23	80	9	63	35	8	9	46	1.66
12710--12799	26	3.4	26	84	1	117	23	10	33	33	1.88
12886--12912	12	2.2	12	100	0	54	0	14	0	85	0.61
14537--14602	27	2.4	27	87	5	89	45	24	15	15	1.84
14857--14930	26	2.8	26	81	4	94	40	22	16	20	1.91
18859--18895	13	2.9	13	92	4	58	35	24	8	32	1.85
25392--25444	20	2.6	21	79	8	65	30	16	1	50	1.56
26960--27067	22	4.9	22	75	0	81	34	18	12	34	1.89
27630--27679	17	3.0	16	80	8	55	22	20	22	36	1.96
29327--29363	20	1.9	21	84	15	53	37	5	5	51	1.48
29627--29661	18	1.9	18	88	0	52	5	34	2	57	1.37
30141--30185	1	45.0	1	100	0	90	100	0	0	0	0.00
31606--31646	20	2.0	20	90	0	64	36	17	7	39	1.77
31913--31962	25	2.0	25	88	0	73	56	22	8	14	1.64
32246--32637	72	5.5	70	77	6	358	40	23	18	17	1.91
32246--32637	35	11.1	35	76	4	356	40	23	18	17	1.91
32243--32637	107	3.7	107	88	1	587	40	23	18	17	1.91
39376--39472	35	2.7	34	81	10	106	41	16	16	25	1.89
40465--40499	18	1.9	18	88	0	52	5	34	2	57	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40964--40996	1	33.0	1	100	0	66	100	0	0	0	0.00
42419--42459	20	2.0	20	95	0	73	34	17	9	39	1.82
42710--42765	25	2.2	25	87	0	76	51	26	12	8	1.69
42900--42959	31	1.9	31	96	0	111	31	20	18	30	1.96
43610--43646	17	2.2	16	90	4	56	43	16	0	40	1.48
44800--44848	20	2.4	20	86	3	62	61	4	6	28	1.38
47545--47603	22	2.7	21	85	12	75	84	13	0	1	0.69
47548--47600	17	3.1	17	84	15	65	86	11	0	1	0.64
47545--47600	28	2.0	28	86	13	80	85	12	0	1	0.67
48384--48437	22	2.5	22	96	0	99	29	20	18	31	1.96
48989--49027	20	2.0	20	85	10	53	28	5	2	64	1.28
49193--49403	22	9.5	22	69	11	101	36	8	18	37	1.81
49194--49315	44	2.8	44	86	5	158	36	10	18	35	1.85
49190--49384	66	2.9	65	78	9	189	34	8	18	37	1.82
49190--49403	112	1.9	110	82	5	261	35	8	18	37	1.81
49414--49464	20	2.4	21	83	6	59	41	7	13	37	1.74
49408--49756	22	15.8	21	70	17	119	38	10	16	34	1.82
49408--50265	44	19.9	44	65	17	152	37	10	16	36	1.83
49548--49731	66	2.8	65	75	14	162	39	9	16	34	1.81
49856--50262	22	18.7	22	68	17	120	36	10	14	37	1.81
50024--50086	23	2.7	23	95	0	108	33	9	14	42	1.78
49837--50127	22	13.5	22	73	13	144	37	9	15	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52036--52088	2	26.5	2	96	0	97	1	0	50	47	1.12
53721--53928	102	2.0	101	93	0	353	24	21	9	45	1.81
54097--55207	37	30.4	37	83	7	972	24	17	11	45	1.82
54022--54730	35	19.8	33	81	7	326	25	18	10	45	1.82
61069--61192	27	4.9	27	77	15	104	37	24	16	20	1.93
61455--61656	52	3.9	52	94	3	356	28	26	10	34	1.89
61720--62057	50	6.8	50	94	0	577	27	13	28	30	1.94

Tables:   1

The End!