genome.fa.s12336.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012336.1 Corchorus olitorius cultivar O-4 contig12369, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60006

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4676--4722	26	1.9	23	87	12	67	40	4	27	27	1.75
8028--8762	366	2.0	364	94	1	1274	31	18	22	27	1.97
10196--10235	14	2.8	14	84	3	53	50	2	0	47	1.14
14668--14701	16	2.1	16	88	0	50	2	23	0	73	0.97
17402--17466	31	2.1	31	88	0	94	35	27	13	23	1.93
17476--17973	90	5.5	90	87	0	654	30	24	18	26	1.98
17939--18008	35	2.0	35	88	0	104	25	24	21	28	1.99
18104--18436	54	6.2	53	84	2	389	35	23	14	27	1.94
18104--18436	108	3.1	108	86	2	429	35	23	14	27	1.94
18104--18436	161	2.1	161	86	0	459	35	23	14	27	1.94
20055--20088	16	2.2	16	89	5	52	5	26	0	67	1.13
20281--20330	21	2.3	23	86	6	68	8	8	0	84	0.79
20281--20330	11	4.5	11	87	9	66	8	8	0	84	0.79
28372--28423	14	3.7	14	80	10	52	38	11	5	44	1.65
28366--28416	26	2.0	25	81	14	59	39	15	3	41	1.66
28366--28424	28	2.1	27	82	14	68	42	13	5	38	1.66
30295--30334	15	2.6	16	88	4	55	15	10	12	62	1.54
30834--30885	24	2.1	24	89	10	79	48	9	15	26	1.76
37798--38244	59	7.6	59	86	4	634	24	14	15	44	1.85
37798--38244	117	3.8	117	91	3	666	24	14	15	44	1.85
38492--38664	29	5.9	29	88	1	231	16	20	25	37	1.93
38494--38659	88	1.9	87	88	3	253	16	20	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38492--38659	58	2.9	59	90	2	259	16	20	25	37	1.93
38616--38696	39	2.1	39	92	0	135	13	17	20	48	1.81
38623--38687	20	3.3	20	71	4	60	15	20	20	44	1.86
50535--50981	47	10.1	46	80	14	505	28	18	4	47	1.69
50733--50802	35	2.0	35	100	0	140	28	20	2	48	1.63
50535--50969	129	3.3	127	86	8	504	29	18	5	46	1.70
50535--50943	176	2.4	171	86	5	536	28	18	5	47	1.70
53721--53759	17	2.3	17	83	12	53	5	17	10	66	1.39
54510--54603	26	3.6	26	89	4	136	37	28	22	11	1.89

Tables:   1

The End!