Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012350.1 Corchorus olitorius cultivar O-4 contig12383, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87036

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7512--7595
44
1.9
43
80
7
98
38
8
10
42
1.70
7677--7724
15
3.0
15
78
21
53
52
0
0
47
1.00
23078--23238
59
2.7
60
85
2
225
33
16
19
29
1.94
23321--23418
29
3.3
29
72
10
108
30
19
15
34
1.93
23289--23449
60
2.7
60
92
1
270
29
18
14
36
1.91
23289--23453
31
5.5
30
67
11
104
30
18
15
35
1.92
48786--48818
15
2.2
15
100
0
66
81
6
6
6
0.97
58438--58466
2
15.0
2
92
7
51
51
0
0
48
1.00
60351--60482
68
1.9
68
89
6
205
46
15
13
24
1.82
62721--62745
13
1.9
13
100
0
50
48
8
0
44
1.32
65709--65876
23
7.3
23
73
9
110
63
19
5
11
1.48
65721--65777
11
5.0
11
77
8
60
64
19
7
8
1.44
65848--65919
37
1.9
37
86
5
101
69
18
4
8
1.30
65824--65931
23
4.6
22
76
11
74
70
17
3
8
1.27
65733--65898
91
1.8
91
87
5
246
63
19
6
10
1.46
65897--65928
11
2.9
11
90
0
55
71
9
3
15
1.24
70781--70959
83
2.2
83
97
0
340
26
32
23
17
1.97
77644--77680
1
37.0
1
100
0
74
100
0
0
0
0.00
79600--79653
27
2.0
27
89
7
83
42
9
3
44
1.54
80101--80134
17
1.9
18
94
5
61
41
8
20
29
1.82
80120--80253
22
6.0
22
75
9
103
35
9
14
40
1.79
80130--80213
44
1.9
44
85
0
114
36
9
11
41
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81444--81485
20
2.1
20
100
0
84
19
19
4
57
1.58
85563--85632
36
1.9
36
91
0
113
32
18
10
38
1.84

Tables:   1

The End!