Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012363.1 Corchorus olitorius cultivar O-4 contig12396, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44238

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--90
3
29.0
3
95
4
137
63
0
36
0
0.95
1931--2307
178
2.1
178
79
4
400
35
15
15
33
1.89
2704--2756
14
3.7
14
82
5
70
67
1
7
22
1.25
2704--2755
15
3.6
14
80
10
61
67
1
7
23
1.27
13724--13769
13
3.3
13
80
14
56
47
13
13
26
1.78
13724--13764
15
2.9
15
85
7
59
48
14
12
24
1.78
14867--14909
13
3.1
14
76
10
52
46
2
0
51
1.13
20280--20324
21
2.1
21
100
0
90
51
8
13
26
1.70
22578--22608
16
1.9
16
100
0
62
32
12
22
32
1.92
26813--26921
56
1.9
57
85
9
152
45
15
15
22
1.84
26941--26992
22
2.4
22
87
6
70
46
11
7
34
1.69
28829--28864
2
18.0
2
100
0
72
50
0
0
50
1.00
29524--29612
35
2.5
35
100
0
178
13
13
13
59
1.61
32882--32909
6
4.7
6
100
0
56
53
14
32
0
1.41
38467--38508
14
3.0
14
83
10
50
45
42
0
11
1.41
40098--40127
15
2.0
15
93
0
51
36
20
16
26
1.93
40468--42750
334
6.9
330
80
6
2153
35
17
14
32
1.90

Tables:   1

The End!