genome.fa.s12366.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012366.1 Corchorus olitorius cultivar O-4 contig12399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159568

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992--1039	25	1.9	25	83	8	62	37	35	2	25	1.68
4695--4732	6	6.5	6	96	3	69	47	0	34	18	1.49
5290--5332	18	2.4	18	88	0	68	30	18	34	16	1.93
6971--7031	31	2.0	31	96	0	113	24	13	22	39	1.90
7038--7073	16	2.2	16	90	0	54	13	11	27	47	1.77
8252--8283	6	5.3	6	100	0	64	0	50	0	50	1.00
18052--18125	36	2.1	36	100	0	148	50	10	16	22	1.76
25061--25104	11	4.1	11	85	11	56	27	0	2	70	0.99
25061--25110	17	2.8	17	87	6	64	30	0	2	68	1.01
25067--25116	24	2.1	23	85	3	64	34	0	0	66	0.92
36906--36930	5	5.0	5	100	0	50	40	40	0	20	1.52
60284--60339	28	2.0	28	96	3	105	44	10	10	33	1.74
63616--63648	15	2.1	16	88	11	50	0	12	0	87	0.53
63619--63647	13	2.1	14	93	6	51	0	10	0	89	0.48
68909--68966	30	1.9	30	92	0	98	24	31	15	29	1.95
71422--71446	12	2.1	12	100	0	50	40	24	0	36	1.55
87149--87226	32	2.4	32	100	0	156	43	24	7	24	1.80
88133--88161	7	4.1	7	100	0	58	44	41	0	13	1.44
90341--90366	3	8.7	3	100	0	52	30	0	0	69	0.89
91500--91525	13	2.0	13	100	0	52	0	23	0	76	0.78
94887--94934	24	2.0	24	91	0	78	31	6	27	35	1.82
100601--100773	39	5.1	31	79	19	177	18	28	5	47	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100633--100773	39	3.8	39	81	16	208	18	28	5	47	1.71
100598--100773	71	2.5	70	94	2	318	18	27	5	47	1.71
102007--102036	15	2.0	15	100	0	60	40	13	0	46	1.43
105225--105253	14	2.1	14	100	0	58	17	27	13	41	1.87
107826--107874	24	2.0	24	96	0	89	28	10	48	12	1.73
107912--107961	25	2.0	24	96	3	91	62	8	22	8	1.49
121848--121910	30	2.1	29	88	2	90	42	17	15	23	1.88
126082--126109	13	2.2	13	100	0	56	35	14	0	50	1.43
133562--133736	62	2.8	62	95	0	314	30	10	9	49	1.70
134084--134126	18	2.4	18	76	0	50	39	0	48	11	1.40
137100--137138	14	2.7	15	88	11	64	74	0	25	0	0.82
137100--137137	17	2.2	17	86	9	51	73	0	26	0	0.83
137872--137942	35	2.0	35	97	0	133	18	30	15	35	1.92
138048--138122	22	3.4	22	79	3	89	37	9	9	44	1.69
138145--138210	24	2.8	24	80	8	66	30	16	6	46	1.71
138670--138703	17	2.0	17	100	0	68	47	5	11	35	1.65
139747--139802	28	2.0	28	96	0	103	41	17	10	30	1.84
144422--144458	16	2.3	16	100	0	74	45	24	10	18	1.81
146342--147385	331	3.2	328	84	4	1374	33	14	18	34	1.90
146841--147920	541	2.0	539	83	5	1347	32	16	17	33	1.92
146516--148255	870	2.0	868	84	4	2306	32	14	18	34	1.91
147386--148921	332	4.6	333	80	5	1751	32	15	17	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148707--149119	215	1.9	215	92	1	702	31	17	18	32	1.95
148922--149784	322	2.6	326	81	6	983	31	14	18	34	1.92
148043--150340	869	2.6	871	84	5	3067	31	15	18	34	1.92
149576--150005	215	2.0	215	88	1	630	30	16	19	33	1.94
149256--150720	550	2.7	546	88	4	2072	32	14	18	35	1.91
150161--150553	215	1.8	215	87	3	594	29	17	19	34	1.94
150753--152283	544	2.8	544	88	3	2105	31	15	17	34	1.92
151524--151950	215	2.0	213	90	0	674	31	16	18	33	1.94
151738--152614	331	2.6	331	82	3	1120	32	15	17	35	1.91
152401--152826	212	2.0	214	88	3	637	31	16	17	34	1.92
151229--153493	876	2.6	877	91	1	3611	32	15	17	34	1.92
152615--154007	334	4.2	332	84	6	1679	32	14	17	34	1.90
152615--154007	661	2.1	662	85	4	1848	32	14	17	34	1.90
154410--159568	332	15.5	332	85	3	6412	32	14	17	34	1.91

Tables:   1

The End!