Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012368.1 Corchorus olitorius cultivar O-4 contig12401, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36325

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--3129
332
9.4
333
89
2
4724
36
17
14
30
1.90
3034--3243
114
1.8
114
89
0
330
40
17
11
30
1.85
2708--3577
447
1.9
448
87
3
1272
37
17
13
31
1.88
3149--6293
334
9.5
331
84
3
3462
35
16
14
32
1.89
11655--11693
2
19.5
2
100
0
78
51
0
0
48
1.00
15635--15746
56
2.0
56
100
0
224
21
16
26
35
1.94
15733--16124
130
3.0
130
98
0
748
32
15
26
25
1.95
16215--16307
46
2.0
46
97
0
177
39
17
15
27
1.89
22830--23097
87
3.0
87
94
3
446
36
15
22
25
1.94
34658--34874
114
1.9
114
96
0
398
25
27
23
22
2.00
34792--34957
83
2.0
83
98
0
323
25
28
24
20
1.99

Tables:   1

The End!