Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012399.1 Corchorus olitorius cultivar O-4 contig12432, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57918

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
982--1041
27
2.3
27
94
2
104
48
13
3
35
1.59
7301--7340
12
3.2
12
96
3
71
25
0
42
32
1.55
9196--9231
18
2.0
18
89
10
56
33
11
11
44
1.75
9783--9838
24
2.3
24
93
0
94
21
25
30
23
1.99
10846--10913
33
2.1
33
97
0
127
26
11
29
32
1.92
11133--11183
25
2.0
25
100
0
102
25
15
7
50
1.71
20468--20495
1
28.0
1
100
0
56
0
0
0
100
0.00
31617--31695
27
2.9
27
86
1
104
18
21
21
37
1.94
37179--37226
19
2.5
19
86
3
69
20
25
35
18
1.95
43369--43393
13
1.9
13
100
0
50
80
0
12
8
0.92
43779--43855
20
3.8
20
86
5
111
79
10
1
9
1.00
43800--43849
15
3.3
15
80
8
57
80
10
2
8
0.99
43781--43826
12
3.8
12
77
11
58
80
8
0
10
0.91
43782--43827
24
1.9
24
86
0
65
80
8
0
10
0.91
43779--43857
39
2.1
36
88
6
113
79
10
1
8
0.98
43785--43825
11
3.5
12
86
6
50
78
9
0
12
0.98
44158--44190
14
2.3
15
89
5
50
69
0
18
12
1.18
44614--44763
50
3.0
50
89
1
221
30
17
16
36
1.92
45922--46076
69
2.2
69
94
0
265
25
30
18
24
1.98
46118--46263
67
2.1
68
82
5
179
26
27
15
30
1.96
49547--49634
36
2.4
36
96
0
158
35
11
13
39
1.81
54718--54803
44
2.0
43
81
6
102
24
19
11
44
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55981--56018
14
2.8
13
92
7
67
44
5
15
34
1.69
56290--56328
12
3.2
12
85
0
60
58
12
2
25
1.47
56688--56732
12
3.8
12
77
16
58
73
0
15
11
1.10
57643--57915
50
5.5
50
95
0
465
28
28
15
27
1.96

Tables:   1

The End!