Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012440.1 Corchorus olitorius cultivar O-4 contig12473, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44543

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
761--798
15
2.4
16
91
4
60
15
2
13
68
1.32
1328--1360
13
2.6
13
90
4
50
42
30
0
27
1.56
1452--1490
2
19.5
2
94
0
69
46
53
0
0
1.00
3035--3079
20
2.2
20
96
0
81
35
0
31
33
1.58
5631--5846
25
8.6
25
86
4
283
22
20
27
28
1.99
8480--8535
15
3.5
15
77
13
67
16
14
26
42
1.86
8464--8526
18
3.7
18
77
12
69
20
17
25
36
1.94
8605--8715
27
4.1
27
92
0
186
18
22
39
18
1.92
10178--10418
25
9.6
25
87
3
315
21
20
28
29
1.98
15043--15523
198
2.6
181
79
10
520
34
10
24
30
1.89
15594--15674
3
27.0
3
92
5
137
64
0
0
35
0.94
15594--15688
15
6.3
15
92
4
65
61
1
1
36
1.10
16393--16423
6
5.2
6
100
0
62
0
16
32
51
1.44
18145--18215
27
2.5
28
76
15
74
45
7
11
36
1.67
20114--20370
128
2.0
128
86
6
360
28
19
11
40
1.86
21374--21429
21
2.6
23
72
18
57
51
1
0
46
1.11
25625--25667
22
2.0
22
85
0
59
60
2
9
27
1.40
25563--25731
93
1.8
93
92
0
284
52
2
11
33
1.51
25767--25830
31
2.0
32
93
3
112
40
6
25
28
1.79
27180--27240
32
1.9
32
93
0
104
47
6
19
26
1.74
28657--28696
2
20.5
2
94
5
73
47
0
0
52
1.00

Tables:   1

The End!