Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012442.1 Corchorus olitorius cultivar O-4 contig12475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45676

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4236--4283
17
2.9
17
76
14
55
77
2
20
0
0.88
11205--11231
5
5.4
5
100
0
54
62
18
0
18
1.32
14830--15342
255
2.0
255
93
0
882
30
19
17
32
1.95
27217--27266
24
2.1
24
100
0
100
32
18
4
46
1.67
31559--31654
33
2.9
33
76
16
108
47
17
12
21
1.81
32343--32379
19
1.9
19
89
10
58
21
27
2
48
1.63
32362--32540
71
2.6
69
88
4
277
23
16
7
51
1.70
33794--33820
12
2.2
12
100
0
54
51
0
0
48
1.00
34080--34134
22
2.5
22
82
5
67
38
12
12
36
1.82
34191--34245
22
2.5
22
82
5
67
36
14
18
30
1.91
34337--34522
22
8.5
21
69
14
108
37
11
17
33
1.87
34734--34782
22
2.2
22
77
0
53
40
6
12
40
1.67
38095--38141
16
3.2
14
80
14
51
48
2
0
48
1.13
38590--38940
22
15.7
22
66
17
104
39
9
15
35
1.80
38634--38696
23
2.8
23
83
4
85
31
9
15
42
1.79
39064--39601
22
24.7
22
68
14
186
38
10
15
35
1.82
39228--39286
23
2.6
24
82
15
72
35
3
22
38
1.71
42313--42377
34
1.9
34
93
0
112
43
16
15
24
1.87
42365--42514
75
2.0
75
89
2
230
42
17
9
31
1.81

Tables:   1

The End!