Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012552.1 Corchorus olitorius cultivar O-4 contig12585, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112104

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3658--3718
30
2.0
30
81
6
70
26
13
4
55
1.57
4293--4508
86
2.5
86
98
0
414
35
14
6
43
1.71
6190--6223
18
1.9
18
88
5
52
47
2
11
38
1.55
7076--7111
19
1.9
18
88
5
54
41
8
22
27
1.82
12191--12227
19
1.9
19
88
0
56
8
5
18
67
1.36
13818--13871
26
2.1
26
82
0
63
51
11
11
25
1.70
14376--14476
39
2.6
39
74
13
93
35
19
21
22
1.96
14523--14912
39
9.6
39
68
14
155
37
15
20
26
1.92
14652--14911
39
6.6
38
74
12
161
38
15
20
25
1.92
24035--24073
16
2.4
16
80
16
53
71
10
17
0
1.12
27301--27329
11
2.7
11
94
5
51
6
3
20
68
1.27
29197--29250
26
2.1
26
89
0
81
55
9
11
24
1.64
31146--31185
19
2.2
19
86
4
55
82
7
10
0
0.84
33892--35223
35
37.8
35
83
4
1332
45
9
16
28
1.78
33888--35223
106
12.6
105
84
4
1584
45
9
16
28
1.78
33888--35223
141
9.5
140
85
4
1604
45
9
16
28
1.78
33907--35223
71
18.7
70
82
7
974
46
9
16
28
1.78
36383--36431
18
2.7
18
83
3
62
48
8
2
40
1.44
37925--37969
19
2.4
19
88
7
65
35
28
8
26
1.87
41769--41799
7
4.4
7
100
0
62
87
0
0
12
0.55
51909--52030
61
2.0
61
100
0
244
29
22
6
40
1.79
52370--52399
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67845--67935
27
3.4
27
87
3
130
34
26
20
18
1.96
68478--68769
120
2.4
120
87
1
397
41
14
7
35
1.75
86971--87031
29
2.1
29
96
0
113
45
31
11
11
1.76
92683--92721
20
1.9
21
89
5
62
69
10
0
20
1.17
100778--100813
19
1.9
18
88
5
54
33
22
2
41
1.68
104562--104606
21
2.1
21
83
0
54
40
26
8
24
1.84

Tables:   1

The End!