Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012664.1 Corchorus olitorius cultivar O-4 contig12697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59861

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11765--11795
11
2.8
11
100
0
62
12
0
19
67
1.22
19153--19184
2
16.0
2
93
0
55
46
3
0
50
1.17
23851--23986
72
1.9
72
90
0
218
36
14
8
40
1.77
37321--37350
15
2.0
15
100
0
60
0
33
13
53
1.40
40133--40277
71
2.0
72
89
5
222
33
6
17
41
1.77
41322--41415
45
2.1
45
100
0
188
36
25
23
14
1.93
42007--42040
2
17.0
2
100
0
68
50
0
0
50
1.00
42903--42950
12
3.9
12
86
2
69
33
16
27
22
1.96
44007--44052
3
16.3
3
86
13
71
34
36
0
28
1.58
44007--44052
11
4.1
11
97
2
83
34
36
0
28
1.58
44007--44052
14
3.3
15
85
14
71
34
36
0
28
1.58
44294--44319
10
2.6
10
100
0
52
30
7
23
38
1.83
44430--44468
12
3.6
12
74
25
50
30
15
28
25
1.96
45107--45266
80
2.0
80
93
0
275
31
11
33
23
1.90
50467--50491
12
2.1
12
100
0
50
8
92
0
0
0.40
53903--54233
41
8.2
41
84
4
397
35
7
25
31
1.83
53902--54209
20
15.3
20
64
11
137
35
8
25
30
1.85
53903--54233
81
4.1
81
87
5
424
35
7
25
31
1.83
56789--59861
332
9.3
331
83
5
3709
33
13
17
36
1.88

Tables:   1

The End!