Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012665.1 Corchorus olitorius cultivar O-4 contig12698, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93597

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
621--3024
26
85.0
26
83
10
2121
33
20
15
29
1.94
621--3024
88
28.3
78
82
10
2121
33
20
15
29
1.94
834--2987
31
75.0
30
84
9
2311
33
20
15
29
1.94
638--3011
57
41.8
56
83
10
2337
33
20
15
29
1.94
2937--3023
24
3.3
26
84
9
97
32
22
14
29
1.94
9880--12255
337
7.2
333
83
5
2775
33
14
17
35
1.89
9880--12255
671
3.6
660
84
4
2846
33
14
17
35
1.89
12261--12873
26
23.7
26
86
3
779
34
24
13
27
1.93
13045--13084
20
2.0
21
90
5
64
55
15
2
27
1.53
20923--20976
27
2.0
27
92
0
90
7
25
3
62
1.38
27755--27838
41
2.0
42
90
6
136
28
23
25
22
1.99
28949--28987
19
2.1
19
100
0
78
25
23
10
41
1.86
78255--78279
13
1.9
13
100
0
50
60
0
0
40
0.97
84234--84270
19
1.9
19
94
0
65
37
8
18
35
1.81
86088--86124
19
1.9
19
100
0
74
37
13
16
32
1.87
86138--86207
35
2.0
35
97
0
131
30
17
18
34
1.94
88472--88565
50
2.0
44
84
15
120
35
5
12
46
1.65
88515--88705
102
1.8
104
85
3
269
35
8
12
43
1.72
88764--89034
133
2.0
133
82
9
325
34
12
12
39
1.82
90748--90791
15
2.9
15
89
0
52
27
9
4
59
1.48
93292--93395
51
2.0
51
100
0
208
30
13
17
38
1.88

Tables:   1

The End!