Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012698.1 Corchorus olitorius cultivar O-4 contig12731, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109620

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7000--7054
22
2.6
21
78
16
60
7
27
43
21
1.79
7014--7056
22
1.9
23
90
4
70
6
25
46
20
1.76
15804--15855
24
2.2
24
96
3
97
7
7
26
57
1.54
16064--16425
30
11.8
30
83
5
384
30
18
19
31
1.95
22824--22869
23
2.0
23
86
0
65
19
26
4
50
1.66
23036--23101
33
2.0
33
91
2
107
16
30
4
48
1.66
23121--23151
12
2.6
12
94
0
53
38
16
6
38
1.74
23146--23234
33
2.7
33
98
0
169
30
19
21
29
1.97
23244--23303
29
2.1
28
87
3
84
30
18
16
35
1.93
24634--24718
35
2.4
35
92
0
143
34
15
21
29
1.94
24634--24728
35
2.7
35
85
6
129
33
14
23
28
1.94
28126--28178
23
2.2
24
80
16
65
15
26
7
50
1.70
28127--28172
23
2.0
23
87
8
67
17
26
8
47
1.76
29885--29909
13
1.9
13
100
0
50
8
24
24
44
1.80
38724--38776
27
2.0
27
84
0
70
33
18
16
30
1.94
44051--44112
30
2.1
30
100
0
124
32
29
9
29
1.89
55490--55530
17
2.4
17
100
0
82
26
12
31
29
1.92
71519--71561
21
2.0
21
86
8
61
44
2
13
39
1.57
76111--76284
35
4.7
36
77
12
149
27
15
17
39
1.90
76109--76284
74
2.4
75
81
9
200
27
15
17
40
1.89
78849--78949
49
2.1
49
96
0
184
53
4
6
34
1.49
83810--83851
22
1.9
22
95
0
75
28
11
14
45
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87313--87548
51
4.6
51
89
3
341
28
19
14
37
1.91
101494--101527
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!