Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012706.1 Corchorus olitorius cultivar O-4 contig12739, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36197

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9889--9990
51
2.0
50
83
9
127
21
22
13
42
1.88
14286--14324
21
1.9
21
85
15
55
28
0
7
64
1.21
14863--15167
87
3.5
87
92
0
493
34
19
13
32
1.91
15266--15628
69
5.2
69
94
0
627
26
27
15
29
1.96
15266--15625
139
2.6
138
94
0
621
26
27
15
29
1.96
15630--15818
91
2.1
92
86
1
263
27
17
25
29
1.97
16139--16209
27
2.6
27
93
0
115
15
12
29
42
1.84
16515--16539
13
1.9
13
100
0
50
56
4
16
24
1.57
31580--31605
8
3.2
8
100
0
52
34
0
11
53
1.37
31706--31741
19
1.9
18
88
5
54
41
8
22
27
1.82
35040--35194
22
7.1
22
86
1
213
14
22
6
56
1.60
35040--35194
65
2.4
65
86
1
220
14
22
6
56
1.60
35185--36047
148
5.9
143
80
11
853
22
19
7
50
1.72
35205--36032
47
17.1
47
81
10
844
23
19
7
50
1.72

Tables:   1

The End!