Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012734.1 Corchorus olitorius cultivar O-4 contig12767, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34946

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10321--10477
24
6.6
24
86
3
201
21
21
34
22
1.97
10893--11327
218
2.0
218
97
0
825
24
25
14
36
1.93
14158--14314
24
6.5
24
93
0
251
21
19
35
23
1.96
16972--17408
218
2.0
217
95
0
784
24
25
13
36
1.92
19132--19177
24
1.9
24
86
0
65
63
2
28
6
1.31
20199--21284
36
30.0
35
79
10
697
46
10
17
25
1.80
20205--21194
72
13.6
71
80
11
781
46
10
17
24
1.80
20207--21284
183
6.0
180
84
7
1132
46
10
17
25
1.79
20951--21011
19
3.3
19
67
4
61
49
9
18
22
1.77
23431--23471
20
2.0
20
95
0
73
39
24
9
26
1.86
28452--28500
25
2.0
25
95
0
89
26
12
22
38
1.89

Tables:   1

The End!