Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012810.1 Corchorus olitorius cultivar O-4 contig12843, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41050

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8457--8514
16
3.7
16
82
15
68
53
1
37
6
1.38
9658--9706
15
3.3
15
80
11
64
4
44
0
51
1.20
11236--11297
20
3.0
21
80
7
81
38
24
9
27
1.86
20189--20236
21
2.4
19
86
13
62
39
8
14
37
1.76
23068--23110
21
2.0
21
86
9
59
16
58
20
4
1.56
25687--25738
22
2.4
22
96
0
95
15
26
15
42
1.87
27732--27770
12
3.3
12
92
3
62
74
10
7
7
1.22
30494--30535
20
2.1
20
95
0
75
35
14
14
35
1.86
34373--34630
29
8.9
29
85
2
313
17
18
24
39
1.91
34373--34630
58
4.5
58
87
2
349
17
18
24
39
1.91
34380--34630
87
2.9
86
87
1
358
17
18
23
41
1.90
35405--35430
2
13.0
2
100
0
52
50
0
0
50
1.00
35910--36429
60
8.6
60
88
3
751
25
17
14
42
1.87
35910--36442
123
4.4
123
90
4
833
24
16
14
43
1.86
35910--36442
183
2.9
183
91
1
860
24
16
14
43
1.86
36710--36940
29
8.0
29
88
3
286
17
18
24
39
1.92

Tables:   1

The End!