genome.fa.s12850.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012850.1 Corchorus olitorius cultivar O-4 contig12883, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106561

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15--896	333	2.7	330	87	3	1202	31	15	15	37	1.88
1858--1926	34	2.0	34	88	5	104	37	13	18	30	1.89
2879--2913	16	2.2	16	94	0	61	51	0	0	48	1.00
3434--3467	16	2.1	17	94	5	61	85	0	14	0	0.60
8692--8763	32	2.3	32	92	2	119	25	19	18	37	1.94
9830--9886	15	3.8	15	90	0	87	38	15	21	24	1.92
9830--9912	30	2.8	30	84	0	94	39	16	18	25	1.91
9863--9912	15	3.3	15	94	0	82	44	12	18	26	1.84
12149--12189	1	41.0	1	100	0	82	0	0	0	100	0.00
38894--38947	27	2.0	27	92	0	90	53	14	3	27	1.58
49340--49408	22	3.0	22	91	8	120	34	17	4	43	1.69
51201--51240	14	2.8	13	88	11	53	45	0	47	7	1.31
56997--57058	32	1.9	32	90	0	97	37	16	9	37	1.81
72306--72353	23	2.0	24	84	11	64	20	20	0	58	1.40
75559--75698	60	2.3	60	90	2	219	37	18	17	26	1.93
75595--75699	31	3.5	31	70	15	110	36	20	19	24	1.95
75798--75856	31	1.9	31	82	6	75	37	18	10	33	1.85
80956--81065	54	2.0	54	94	0	193	40	11	3	43	1.59
84655--84689	17	2.0	18	88	5	54	85	2	11	0	0.69
94414--94471	19	2.9	19	71	5	53	36	12	20	31	1.89
100333--100379	23	2.0	23	88	8	69	38	6	4	51	1.47
104182--104223	21	2.0	21	85	0	57	30	0	35	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104318--104354	19	2.0	19	89	5	58	40	0	0	59	0.97

Tables:   1

The End!