genome.fa.s12983.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01012983.1 Corchorus olitorius cultivar O-4 contig13016, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34898

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7902--8049	38	3.9	38	90	1	217	23	17	35	23	1.95
8079--8110	6	5.3	6	100	0	64	15	0	34	50	1.45
10228--10267	16	2.5	16	83	0	53	80	0	12	7	0.91
10209--10257	24	2.0	24	88	4	71	81	0	6	12	0.86
10211--10264	25	2.2	24	83	3	63	83	0	9	7	0.82
11347--11831	88	5.6	88	87	4	684	19	14	22	43	1.87
11411--11747	36	8.2	36	70	23	145	20	14	21	43	1.87
11497--11747	36	6.3	37	74	20	193	20	13	21	43	1.86
11347--11831	177	2.8	168	88	4	706	19	14	22	43	1.87
11578--11831	80	3.1	80	88	4	346	19	14	22	42	1.88
11658--11831	87	2.0	88	89	1	269	19	14	21	43	1.87
11754--11849	36	2.7	36	78	0	102	18	16	22	41	1.90
14434--14579	37	3.9	35	76	12	123	26	13	25	34	1.93
14452--14579	37	3.4	37	82	2	157	26	14	26	32	1.95
19323--19356	17	1.9	18	88	5	52	50	23	5	20	1.70
19347--19391	23	2.0	23	91	4	74	31	17	20	31	1.96
19791--20107	39	8.1	39	81	4	334	39	12	19	28	1.89
20042--20173	66	2.0	66	90	0	210	42	12	18	26	1.86
20104--20329	39	5.8	38	79	4	218	42	12	18	26	1.85
20002--20329	105	3.0	105	75	16	286	42	12	18	25	1.86
20069--20205	66	2.1	66	79	8	145	45	12	15	26	1.81
19963--20249	144	2.0	144	85	1	387	41	12	18	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19925--20288	183	2.0	183	86	2	516	40	13	19	26	1.88
20108--20329	117	1.9	117	85	3	313	43	12	18	26	1.85
20105--20351	78	3.2	78	78	6	266	44	12	17	25	1.83
20104--20351	117	2.1	117	82	5	297	44	12	17	25	1.84
20396--20976	167	3.7	147	82	11	558	30	14	19	35	1.92
21961--22027	31	2.1	34	86	8	95	7	22	1	68	1.23
31472--31507	19	1.9	18	88	5	54	33	22	2	41	1.68

Tables:   1

The End!