Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013162.1 Corchorus olitorius cultivar O-4 contig13195, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67640

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3208--3254
20
2.3
21
81
7
60
44
17
23
14
1.85
4224--4266
11
3.9
11
81
0
50
39
20
11
27
1.88
4291--4329
21
1.9
20
84
5
51
43
25
2
28
1.68
7139--7255
31
3.8
31
87
0
162
36
25
21
16
1.94
11681--11741
31
2.0
31
96
0
113
27
14
22
34
1.94
14616--14652
6
6.5
6
87
12
60
0
16
0
83
0.64
14615--14653
5
7.2
5
83
16
51
0
20
0
79
0.73
14615--14653
11
3.5
11
100
0
78
0
20
0
79
0.73
15217--15243
13
2.1
13
100
0
54
22
22
22
33
1.97
31458--31540
41
2.0
41
100
0
166
49
4
26
19
1.68
33323--33367
23
2.0
23
86
0
63
2
15
0
82
0.77
33322--33360
19
2.2
19
86
13
57
2
17
0
79
0.84
37487--37560
36
2.1
36
89
0
112
39
9
21
29
1.85
45444--45483
2
20.0
2
100
0
80
50
0
0
50
1.00
51099--51135
19
1.9
19
89
10
58
16
32
13
37
1.87
51292--51316
13
1.9
13
100
0
50
48
20
8
24
1.76
52329--52415
45
1.9
45
83
4
113
37
16
12
33
1.86
54497--54612
57
2.0
57
98
0
223
42
15
12
30
1.83
56989--57051
33
1.9
33
96
0
117
30
20
20
28
1.98
57059--57119
29
2.1
29
96
0
113
29
21
16
32
1.95
57139--57247
54
2.0
54
92
0
182
32
21
11
35
1.88
58503--58599
35
2.8
35
93
0
158
36
15
21
26
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60043--60073
15
2.1
15
93
0
53
32
32
19
16
1.94
62058--62088
2
15.5
2
100
0
62
48
0
0
51
1.00
65502--65574
35
2.1
34
87
7
103
10
1
38
49
1.47
66201--66339
35
4.0
34
89
4
197
28
15
17
39
1.89
66321--66360
21
1.9
21
85
10
55
27
25
10
37
1.88
66989--67033
14
3.3
14
84
3
56
33
31
6
28
1.83

Tables:   1

The End!