genome.fa.s13299.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013299.1 Corchorus olitorius cultivar O-4 contig13332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109649

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--2395	911	2.6	913	96	1	4373	33	13	13	38	1.85
5671--5701	15	2.1	15	93	0	53	51	0	0	48	1.00
5674--5724	19	2.7	18	82	8	66	45	0	1	52	1.12
18042--18082	20	2.0	20	86	9	57	29	29	19	21	1.98
18075--18151	33	2.3	33	97	0	145	25	22	25	25	2.00
22337--22368	16	2.0	16	93	0	55	21	18	0	59	1.38
23643--23681	18	2.2	18	90	0	60	43	17	25	12	1.85
32366--33363	497	2.0	497	98	0	1915	30	18	20	30	1.97
34393--34426	17	1.9	18	88	5	52	11	14	5	67	1.39
35398--35438	21	2.0	21	90	0	64	34	7	24	34	1.83
38585--38840	127	2.0	128	99	0	505	33	15	22	27	1.95
41267--41330	26	2.4	27	89	2	94	17	28	1	53	1.53
41386--41424	9	4.3	9	81	12	53	15	17	0	66	1.25
41434--41488	22	2.5	22	88	5	76	25	23	5	45	1.74
41454--41676	42	5.4	42	77	13	214	20	21	5	52	1.67
41532--41604	7	10.3	7	74	12	51	17	23	4	54	1.60
41554--41655	37	2.8	35	83	5	114	19	20	4	54	1.62
52620--52676	30	1.9	30	85	7	80	42	8	17	31	1.80
66022--66061	15	2.6	16	92	4	64	65	12	7	15	1.47
67649--67688	15	2.6	16	92	4	64	65	12	7	15	1.47
85111--85326	109	2.0	109	93	0	369	31	11	13	43	1.80
87862--87909	24	2.0	25	83	4	62	16	6	6	70	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101960--101994	18	1.9	18	94	0	61	31	22	2	42	1.68
101955--102005	10	5.1	10	76	13	52	35	19	3	41	1.70
101955--102005	18	2.6	19	81	15	59	35	19	3	41	1.70
105787--106226	154	2.9	154	95	1	774	20	18	20	41	1.91
106174--106274	52	1.9	52	100	0	202	23	16	16	42	1.88
106020--106429	206	2.0	206	95	0	732	21	17	19	42	1.89
106226--106893	154	4.3	154	91	1	1074	21	18	20	40	1.92
105869--106584	360	2.0	360	94	0	1254	21	17	20	41	1.91
106840--106945	52	2.0	53	94	1	187	22	16	16	43	1.88
106688--107098	205	2.0	205	91	2	666	22	18	18	39	1.92
106537--107611	358	3.0	357	94	1	1891	21	18	19	40	1.92
106893--107251	153	2.3	154	92	2	589	22	18	19	39	1.92
107199--107303	52	2.0	52	98	0	201	22	16	17	43	1.87
107047--107457	206	2.0	204	92	1	680	21	18	18	40	1.91
107251--107918	154	4.3	154	93	0	1088	21	19	19	39	1.92
107866--107971	52	2.0	53	94	1	187	23	18	16	40	1.91
107712--108110	208	1.9	207	90	2	631	23	18	18	39	1.92
107918--109046	155	7.3	154	89	4	1681	21	18	19	40	1.92
107918--109046	309	3.7	307	88	4	1688	21	18	19	40	1.92
108994--109099	52	2.0	53	94	1	187	22	17	16	42	1.89
108841--109254	208	2.0	205	89	3	634	21	18	18	41	1.91
108686--109649	361	2.7	358	92	2	1637	20	18	19	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109046--109407	153	2.3	156	89	3	545	21	19	19	39	1.92
109355--109455	52	1.9	52	97	0	193	24	16	16	41	1.89
109203--109613	205	2.0	206	93	1	709	21	18	19	41	1.91

Tables:   1

The End!