Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013302.1 Corchorus olitorius cultivar O-4 contig13335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42915

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1515--1553
20
1.9
21
89
5
62
43
12
12
30
1.81
1579--1626
23
2.1
23
92
0
78
33
14
12
39
1.84
3221--3360
21
6.6
21
71
14
81
38
13
7
40
1.72
6074--6134
27
2.3
27
83
11
72
45
1
9
42
1.47
6254--6375
22
5.5
22
76
5
97
37
12
10
39
1.78
6254--6380
44
2.9
44
81
5
143
37
13
10
38
1.79
6384--6441
22
2.6
22
75
2
62
27
15
10
46
1.78
6639--6711
28
2.5
30
84
8
96
26
19
10
43
1.83
6864--6945
31
2.7
31
94
1
139
41
9
15
32
1.80
8133--8212
29
2.7
29
86
3
97
40
11
20
28
1.86
10793--10817
2
12.5
2
100
0
50
48
0
0
52
1.00
11204--11529
179
1.8
178
86
4
469
34
14
15
35
1.88
21131--21201
26
2.7
26
87
8
92
18
12
26
42
1.86
22865--22920
24
2.3
24
84
6
69
50
35
3
10
1.55
23475--23500
10
2.6
10
100
0
52
57
0
42
0
0.98
28759--28824
21
3.0
21
81
12
80
15
22
19
42
1.88
37193--37228
19
1.9
18
88
5
54
27
22
8
41
1.82
41051--41505
71
6.4
71
83
4
443
18
21
18
41
1.91
41089--41562
179
2.6
177
81
4
486
18
21
17
41
1.90
41051--41566
35
14.5
35
80
4
397
18
21
18
41
1.90

Tables:   1

The End!