Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013341.1 Corchorus olitorius cultivar O-4 contig13374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62759

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13412--13442
15
2.1
15
94
5
55
38
0
12
48
1.42
13706--13742
19
1.9
19
88
0
56
37
10
21
29
1.88
18078--18102
13
1.9
13
100
0
50
40
8
16
36
1.77
18976--19017
20
2.1
20
86
0
57
4
45
2
47
1.36
24997--25022
13
2.0
13
100
0
52
30
7
23
38
1.83
29497--29534
16
2.4
16
100
0
76
57
18
0
23
1.40
37093--37127
1
35.0
1
100
0
70
0
0
0
100
0.00
46498--46872
188
2.0
183
92
4
626
33
15
15
35
1.89
54723--54765
22
2.0
21
82
13
52
44
13
4
37
1.65
54952--55070
45
2.7
45
79
5
118
40
17
10
31
1.83
54955--55385
22
19.9
22
69
15
184
36
17
9
37
1.81
55091--55195
45
2.3
45
77
7
106
37
17
8
37
1.80
55466--55608
22
6.6
22
73
6
87
32
14
9
42
1.79
55439--55857
44
9.4
44
67
13
155
33
16
10
39
1.83
55439--55604
88
1.9
87
85
6
228
31
14
10
43
1.80
55707--55855
22
6.7
22
73
10
115
37
18
9
34
1.83
56000--56061
22
2.8
22
75
4
63
37
17
11
33
1.86
56229--56267
20
2.0
20
85
10
53
64
2
5
28
1.28
57313--57360
25
1.9
25
83
8
62
58
0
0
41
0.98
57883--57952
35
2.0
35
100
0
140
25
17
11
45
1.81
61099--61192
45
2.0
48
85
8
131
45
7
8
38
1.63

Tables:   1

The End!