Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013599.1 Corchorus olitorius cultivar O-4 contig13632, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20800

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1315--1343
15
1.9
15
100
0
58
20
6
6
65
1.40
2038--2075
20
1.9
20
88
0
58
28
7
10
52
1.64
2374--3959
36
44.2
35
78
9
1364
46
11
16
26
1.80
2374--3859
181
8.3
177
84
6
1648
46
11
16
25
1.80
2374--3891
253
6.0
250
83
7
1516
46
11
16
26
1.80
10991--11037
2
24.0
2
86
4
69
46
0
4
48
1.21
11147--11472
41
7.8
42
84
8
407
21
10
25
42
1.85
11147--11472
84
3.9
83
90
5
525
21
10
25
42
1.85
13838--13874
8
4.3
9
80
13
51
0
16
0
83
0.64
13836--13874
15
2.6
15
88
8
53
0
15
0
84
0.62

Tables:   1

The End!