Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013700.1 Corchorus olitorius cultivar O-4 contig13733, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67006

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20878--20946
30
2.3
30
100
0
138
28
17
30
23
1.97
20993--21030
18
2.1
19
90
5
60
28
13
39
18
1.88
21401--21535
64
2.1
64
95
0
243
15
14
17
52
1.75
21582--21611
15
2.0
15
100
0
60
40
20
6
33
1.78
29920--30035
59
2.0
58
86
8
164
31
13
23
31
1.93
31303--31372
36
1.9
36
88
5
106
20
10
8
61
1.53
31883--32292
203
2.0
202
96
1
750
43
8
11
36
1.71
32364--32409
24
2.0
23
91
4
74
54
6
6
32
1.52
32400--32480
39
2.0
40
92
2
137
37
3
8
50
1.51
35293--35425
31
4.3
31
87
3
160
33
26
22
17
1.96
35293--35438
62
2.4
62
84
1
177
34
25
21
17
1.96
35299--35450
31
4.9
31
86
0
126
34
25
22
18
1.96
37852--37981
50
2.7
48
85
10
167
30
13
6
48
1.69
39941--39996
15
3.7
15
79
9
69
37
28
25
8
1.86
39932--39994
30
2.1
30
96
0
117
39
25
26
7
1.83
43485--43614
50
2.7
48
83
10
158
30
13
6
49
1.69
47450--47484
2
17.5
2
87
0
52
48
0
2
48
1.16
49714--49762
5
10.2
5
85
12
59
77
0
18
4
0.92
56231--56260
2
15.0
2
100
0
60
50
0
0
50
1.00
61525--67005
154
35.6
154
89
2
7902
41
19
18
21
1.91

Tables:   1

The End!