Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013721.1 Corchorus olitorius cultivar O-4 contig13754, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157876

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--1839
332
5.5
331
93
0
3053
34
16
15
33
1.90
3308--3345
19
2.0
19
100
0
76
42
10
26
21
1.85
4021--4056
18
2.0
18
94
0
63
11
13
50
25
1.75
14670--14706
17
2.1
19
90
10
60
83
0
16
0
0.64
21606--21637
16
2.0
16
100
0
64
62
0
6
31
1.20
34159--34209
17
3.1
16
86
8
66
21
21
21
35
1.96
40258--40286
14
2.1
14
100
0
58
20
34
31
13
1.92
45710--45768
21
2.9
21
85
5
77
33
11
22
32
1.90
62796--62847
21
2.5
21
90
0
77
36
5
13
44
1.68
66835--67152
126
2.5
126
90
0
483
28
16
14
39
1.89
69318--69716
191
2.1
190
83
5
493
27
21
17
33
1.96
79568--79640
36
2.0
36
94
0
128
46
19
19
15
1.84
80130--80160
2
16.0
2
93
6
55
48
0
0
51
1.00
82432--82471
21
1.9
21
84
0
53
67
15
15
2
1.34
83990--84026
19
1.9
19
88
0
56
40
13
18
27
1.88
102117--102176
32
1.9
31
86
6
86
33
10
5
51
1.57
115885--115940
24
2.3
23
88
8
85
10
53
7
28
1.62
116027--116080
28
1.9
28
100
0
108
16
14
18
50
1.79
116108--116270
80
2.0
80
100
0
326
18
23
16
41
1.90
122509--122564
28
2.0
28
89
0
85
32
10
10
46
1.73
123163--123665
132
3.8
132
93
0
810
18
33
21
26
1.96
129642--129775
65
2.1
64
90
5
211
59
11
10
17
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129679--129775
29
2.9
35
72
20
107
59
9
11
19
1.58
129668--129766
29
3.1
31
76
15
94
60
12
10
17
1.58
129680--129783
33
3.2
34
73
21
98
62
8
11
17
1.53
132095--132125
15
2.1
15
100
0
62
61
12
6
19
1.53
132153--132187
14
2.5
14
90
0
61
68
0
8
22
1.16
134365--134407
13
3.2
13
81
15
52
4
0
32
62
1.15
137292--137395
52
2.0
52
100
0
208
26
7
23
42
1.81
146275--146372
33
3.0
33
93
3
171
29
34
17
18
1.94
149265--149402
47
2.9
46
76
4
141
20
14
25
39
1.90
149488--149576
47
1.9
46
84
11
119
21
15
21
41
1.90
151666--154991
332
10.0
333
84
3
4125
32
16
16
34
1.91
154751--155271
263
2.0
262
83
4
665
35
11
15
37
1.84
154417--156823
596
4.0
596
73
11
1878
33
14
15
35
1.89
155026--155848
333
2.5
334
82
3
951
33
14
16
35
1.89
156223--157876
332
5.0
331
92
1
2699
34
14
15
35
1.89
156223--157876
661
2.5
662
91
2
2717
34
14
15
35
1.89

Tables:   1

The End!