genome.fa.s13932.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013932.1 Corchorus olitorius cultivar O-4 contig13965, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56567

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613--3413	329	8.5	332	82	4	3356	36	15	16	31	1.90
613--3412	659	4.2	658	92	0	4546	36	15	16	31	1.90
2845--4015	602	1.9	599	82	4	1430	35	15	16	31	1.91
3410--8735	331	16.1	329	76	8	4420	36	15	15	33	1.89
2480--4345	933	2.0	930	90	1	2977	35	15	16	32	1.90
5694--5723	2	15.0	2	92	0	51	0	3	46	50	1.18
9380--9506	45	2.8	45	96	0	236	38	22	6	33	1.79
10479--10526	22	2.2	22	84	0	60	31	14	12	41	1.83
11386--11448	31	2.0	31	96	0	117	20	12	14	52	1.74
11579--11709	49	2.8	48	90	4	205	35	21	7	35	1.82
12317--12362	22	2.0	23	84	12	60	58	13	2	26	1.46
12567--12647	34	2.4	32	81	16	101	41	11	6	40	1.65
12776--12809	5	7.2	5	87	12	54	55	0	20	23	1.43
12773--12809	18	2.1	18	100	0	74	54	0	21	24	1.45
12781--12805	13	1.9	13	100	0	50	56	0	20	24	1.43
13413--13457	2	22.5	2	95	0	81	48	2	0	48	1.13
18090--18127	2	20.0	2	84	10	53	52	0	0	47	1.00
18334--18407	31	2.5	31	95	4	134	41	37	5	14	1.69
19751--20280	275	1.9	275	83	3	672	38	15	10	34	1.83
21432--21458	2	13.5	2	100	0	54	51	0	0	48	1.00
22518--23663	332	3.4	328	78	7	1012	36	14	14	34	1.87
24021--24050	15	1.9	16	93	6	53	53	3	0	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27579--27633	17	3.2	17	78	0	65	34	16	23	25	1.95
29155--29659	279	1.8	278	83	3	676	38	17	10	34	1.84
29437--34383	331	14.8	326	71	13	1612	36	15	14	33	1.87
29450--31642	657	3.3	651	76	11	1640	36	15	13	33	1.87
34725--34792	21	3.2	20	80	15	66	38	2	0	58	1.13
34710--34792	22	3.7	22	79	12	89	38	2	0	59	1.11
35250--35279	15	1.9	16	93	6	53	53	3	0	43	1.17
35525--35569	5	9.4	5	90	9	60	44	0	13	42	1.43
47411--47774	190	1.9	192	90	1	579	28	23	15	33	1.95

Tables:   1

The End!