genome.fa.s14058.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014058.1 Corchorus olitorius cultivar O-4 contig14091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10735

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2949--2989	21	1.9	22	85	14	59	56	14	19	9	1.66
5586--5866	146	1.9	146	82	2	348	38	18	21	21	1.93
6051--6216	86	1.9	87	82	10	207	19	24	22	33	1.97
6116--6574	38	10.9	38	69	22	201	18	28	20	32	1.96
6140--6529	48	8.9	47	67	20	191	17	28	20	33	1.95
6133--6277	47	3.1	47	85	4	186	17	27	20	34	1.95
6188--6572	86	4.5	85	88	5	548	17	29	19	33	1.95
6222--6530	168	1.8	168	94	1	548	17	28	19	34	1.95
7435--7460	11	2.4	11	100	0	52	7	15	7	69	1.35
7940--8055	38	3.1	38	82	2	135	22	27	18	31	1.97
7971--8318	133	2.6	134	83	4	459	21	27	18	32	1.97
8238--10553	38	54.2	38	64	23	328	21	27	18	33	1.96
8107--8639	172	3.2	168	78	9	536	21	28	18	31	1.97
8314--8478	84	1.9	86	91	2	271	21	27	18	32	1.97
8658--8893	86	2.8	86	84	3	262	19	28	19	33	1.96
8443--8811	134	2.8	134	83	1	463	19	28	19	32	1.96
8801--8874	37	2.0	37	81	5	87	24	27	17	31	1.97
8524--9077	219	2.5	217	85	4	745	21	28	18	32	1.97
8877--9079	85	2.4	86	85	5	261	22	29	16	31	1.96
9162--9690	86	6.2	87	72	17	281	20	27	19	33	1.96
9301--10339	86	12.0	85	71	16	449	21	27	18	32	1.97
9401--9474	37	2.0	37	86	5	105	22	28	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9227--10574	134	10.5	130	73	14	543	21	27	18	33	1.96
9162--10703	219	7.2	219	79	10	1496	21	27	18	33	1.96
9649--9861	85	2.5	86	85	1	293	20	29	17	32	1.96
9525--9813	124	2.3	124	87	0	400	19	28	19	33	1.96
9048--9840	343	2.3	343	83	2	1029	20	27	18	33	1.96
8337--9922	600	2.6	595	82	7	1635	20	27	18	33	1.96
9956--10145	85	2.2	85	82	3	247	22	27	18	31	1.97
10152--10339	87	2.2	86	88	0	277	22	26	18	32	1.97
10351--10458	48	2.2	48	78	3	119	21	25	14	37	1.92
10229--10654	172	2.5	173	79	5	431	22	25	18	34	1.96
10516--10632	47	2.5	46	80	6	146	20	26	20	32	1.97
10468--10735	128	2.1	132	83	4	339	20	26	19	33	1.97

Tables:   1

The End!