Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014060.1 Corchorus olitorius cultivar O-4 contig14093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2616

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72--178
38
2.8
38
88
0
142
18
32
19
28
1.96
150--2128
48
45.8
46
67
22
351
19
28
18
33
1.96
243--316
38
1.9
39
86
2
105
24
27
18
29
1.98
190--1970
86
20.8
85
71
16
1036
19
28
18
33
1.96
115--367
133
1.9
133
84
3
339
19
26
20
33
1.97
489--2290
38
42.2
38
66
22
340
19
28
18
33
1.96
858--950
46
2.0
46
85
0
123
20
30
15
34
1.93
565--1241
255
2.6
256
92
1
1099
18
28
18
34
1.95
1077--1155
37
2.1
38
86
6
108
17
27
18
35
1.94
939--1182
133
1.8
133
86
5
359
16
29
19
34
1.94
1142--1640
135
3.8
134
89
3
762
19
29
19
32
1.96
1375--2616
219
5.7
216
79
9
1194
19
27
18
33
1.96
1596--1894
133
2.2
134
80
8
360
19
27
18
34
1.95
1823--2125
136
2.3
135
82
7
366
21
26
17
34
1.95
1949--2616
85
7.8
85
74
14
434
20
27
18
33
1.96
2160--2252
48
1.9
49
84
2
125
17
26
18
37
1.93
2217--2290
37
2.0
37
84
5
96
22
27
20
29
1.98
2293--2614
86
3.8
85
84
2
360
20
27
17
34
1.95
2347--2505
38
3.9
37
71
16
120
20
27
19
32
1.97
2036--2457
133
3.3
131
80
7
371
20
27
19
33
1.96
1077--2505
342
4.1
339
78
11
962
19
27
18
33
1.96

Tables:   1

The End!