Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014127.1 Corchorus olitorius cultivar O-4 contig14160, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49290

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
260--318
19
3.0
19
80
9
82
37
10
20
32
1.86
4276--4328
25
2.1
26
96
3
99
22
13
9
54
1.67
8469--8502
16
2.1
16
100
0
68
50
20
17
11
1.77
12717--12808
46
2.0
46
95
0
166
20
22
20
35
1.96
15999--16056
19
2.9
20
84
5
73
37
12
18
31
1.88
18021--18163
51
2.7
52
80
7
155
37
16
15
30
1.90
31691--31754
21
3.2
20
75
8
67
37
12
18
31
1.88
38018--38050
16
2.1
16
88
5
50
30
6
0
63
1.18
39689--39723
18
1.9
18
100
0
70
28
17
25
28
1.97
44446--44527
42
2.0
42
85
4
112
40
17
14
28
1.88
45927--47517
332
4.8
330
78
4
1723
36
14
15
33
1.88
45631--47517
660
2.9
661
88
2
2740
36
14
15
33
1.88
47444--47595
78
2.0
77
80
1
169
34
15
23
26
1.94
47105--47927
409
2.0
410
92
1
1364
36
14
16
31
1.90
47514--49289
663
2.7
661
93
1
2954
36
15
15
32
1.89
47521--49288
332
5.3
331
78
4
1935
36
15
15
32
1.89

Tables:   1

The End!