genome.fa.s14183.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014183.1 Corchorus olitorius cultivar O-4 contig14216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92014

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--2255	154	14.6	154	93	0	3839	41	18	19	20	1.91
3--2255	615	3.7	616	93	1	3848	41	18	19	20	1.91
3091--3192	52	1.9	53	92	2	170	47	16	20	15	1.83
4916--4991	29	2.7	29	93	4	129	56	13	19	10	1.65
5116--5140	13	1.9	13	100	0	50	48	20	16	16	1.82
5153--5216	31	2.0	32	87	3	94	31	21	14	32	1.93
6004--6056	25	2.1	25	100	0	106	50	7	7	33	1.59
7285--7335	25	2.0	25	100	0	102	27	7	27	37	1.84
7288--7345	25	2.3	25	87	3	80	27	12	20	39	1.88
11208--11274	33	2.0	33	91	0	107	46	17	14	20	1.84
12707--12736	15	2.0	15	93	0	51	43	26	10	20	1.83
15204--15264	21	3.0	20	86	6	88	32	19	11	36	1.88
15979--16028	18	2.8	18	87	3	66	30	14	4	52	1.59
15947--16078	69	1.9	71	85	3	187	30	18	3	47	1.66
16040--16089	19	2.5	20	73	23	52	26	16	2	56	1.51
16157--16415	119	2.1	122	88	7	386	25	21	1	50	1.59
16157--16415	39	6.4	37	67	22	107	25	21	1	50	1.59
16350--16440	25	3.9	24	75	20	86	27	20	0	51	1.48
16157--17119	416	2.3	413	98	1	1856	25	21	2	50	1.59
16508--16830	119	2.7	118	86	9	469	25	21	1	50	1.59
16765--16855	25	3.9	24	75	20	86	27	20	0	51	1.48
16924--17119	57	3.4	57	95	2	331	25	20	2	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16053--17122	19	52.0	19	64	25	251	25	21	2	50	1.60
17104--17188	25	3.6	25	67	28	78	29	17	0	52	1.45
17117--17211	19	4.7	19	70	21	68	29	15	1	53	1.49
17044--17246	44	4.6	44	78	12	188	28	18	1	52	1.54
25169--25198	15	2.0	15	93	0	51	43	26	10	20	1.83
28578--28888	159	1.9	159	95	1	561	42	8	15	33	1.78
28628--28876	82	3.1	81	66	18	221	42	8	15	33	1.77
28908--29086	93	1.9	93	94	0	313	42	6	17	33	1.75
29855--29896	15	2.7	15	92	3	66	64	14	9	11	1.50
30657--30682	11	2.4	11	100	0	52	69	7	15	7	1.35
32791--32820	15	2.1	15	93	6	53	63	6	16	13	1.50
33491--33515	9	2.8	9	100	0	50	12	24	56	8	1.62
36231--36269	20	2.0	20	85	10	53	28	5	2	64	1.28
36435--36960	22	23.9	22	66	19	133	39	10	15	34	1.81
36467--36566	44	2.3	43	89	5	155	36	13	17	34	1.88
36432--36564	66	2.0	66	81	5	153	34	11	17	36	1.85
36608--36686	39	2.0	39	85	9	108	35	7	20	36	1.81
37015--37513	22	22.9	22	69	14	164	37	9	16	37	1.81
37042--37332	44	6.8	44	72	10	217	39	9	16	35	1.81
37926--37993	24	2.8	25	84	2	84	36	2	19	41	1.66
41011--41124	56	2.0	56	98	0	219	33	24	1	40	1.66
41188--41270	42	2.0	42	95	4	150	31	7	14	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58203--58249	22	2.1	22	88	0	67	25	12	0	61	1.31
58143--58326	93	2.0	93	93	0	314	34	13	1	51	1.49
58952--58985	16	2.1	16	88	0	50	8	14	35	41	1.77
64090--64120	2	15.5	2	100	0	62	48	0	0	51	1.00
70722--70776	25	2.3	24	81	9	67	14	30	7	47	1.71
73794--73850	23	2.5	23	85	0	87	31	10	17	40	1.84
73870--73910	20	2.1	19	86	4	55	17	9	21	51	1.74
75972--76271	161	1.9	161	93	1	521	29	14	23	33	1.94
81532--81562	16	1.9	16	93	0	53	38	6	25	29	1.81
82490--82562	36	2.0	36	86	5	103	23	10	13	52	1.72
86202--86238	18	2.1	18	100	0	74	21	18	5	54	1.64
86681--86736	24	2.3	24	100	0	112	53	12	3	30	1.55

Tables:   1

The End!