Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014242.1 Corchorus olitorius cultivar O-4 contig14275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96574

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13079--13238
80
2.0
80
100
0
320
23
18
28
28
1.98
16635--16662
1
28.0
1
100
0
56
100
0
0
0
0.00
21639--21680
21
1.9
22
90
9
68
35
0
14
50
1.43
25866--25895
13
2.2
14
94
5
53
83
0
0
16
0.65
35667--35744
24
3.2
24
92
0
129
37
5
30
26
1.78
35717--35751
18
1.9
18
94
0
61
37
2
34
25
1.71
35717--35757
18
2.4
17
88
8
57
36
2
34
26
1.70
36536--36576
20
2.0
20
100
0
82
36
4
0
58
1.20
59157--59197
6
6.8
6
100
0
82
17
0
0
82
0.66
63179--63239
30
2.0
30
96
0
113
40
14
16
27
1.88
74282--75221
324
2.9
327
88
2
1350
33
13
14
37
1.85
75491--76723
336
3.7
333
87
4
1800
33
13
14
37
1.86
76932--77276
173
2.0
173
92
2
577
25
19
14
41
1.89
84649--84691
5
8.8
5
80
14
54
0
0
13
86
0.58
84654--84691
19
2.1
19
90
5
60
0
0
13
86
0.56
86736--86770
16
2.2
16
90
10
54
20
11
2
65
1.37
88348--88414
20
3.3
20
69
10
64
32
8
25
32
1.87
88387--88613
32
7.1
32
97
0
420
30
8
25
35
1.86
89774--89829
25
2.1
27
84
12
73
23
10
14
51
1.73
89766--89818
26
2.1
26
86
10
74
24
7
15
52
1.68
90451--91323
435
2.0
434
94
0
1541
34
15
15
34
1.89
91703--93937
335
6.7
334
88
3
3180
34
17
14
33
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93695--94146
241
1.9
239
89
4
705
35
15
13
35
1.87
94506--95060
292
1.9
282
90
4
887
35
17
13
33
1.89
94770--96467
334
5.1
332
88
3
2446
34
17
14
33
1.90
94770--96467
667
2.5
664
87
3
2543
34
17
14
33
1.90

Tables:   1

The End!