Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014269.1 Corchorus olitorius cultivar O-4 contig14302, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147847

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2414
334
7.2
334
88
3
3380
35
17
14
32
1.90
1--2414
675
3.6
671
88
3
3451
35
17
14
32
1.90
3615--4775
332
3.6
325
77
9
1159
36
16
14
32
1.89
9506--9552
3
16.0
3
95
4
87
65
0
0
34
0.93
11848--11882
18
1.9
18
88
0
52
28
14
25
31
1.95
17733--17771
3
13.0
3
100
0
78
66
0
33
0
0.92
22498--22523
10
2.6
10
100
0
52
30
26
0
42
1.56
49901--49925
13
1.9
13
100
0
50
56
8
4
32
1.47
67097--67154
19
2.9
19
87
5
80
29
22
12
36
1.90
84055--84096
14
2.9
14
86
6
57
69
0
0
30
0.89
85537--85561
12
2.1
12
100
0
50
40
8
8
44
1.63
85809--85836
2
14.0
2
100
0
56
0
50
0
50
1.00
100707--100889
72
2.5
72
86
3
260
25
20
20
34
1.96
107256--107392
46
3.0
46
91
1
220
52
8
18
20
1.70
107266--107389
26
5.2
24
65
25
68
53
8
18
20
1.69
108903--108983
41
2.0
41
100
0
162
23
14
24
37
1.93
114865--114944
27
3.0
27
96
0
151
7
31
21
40
1.81
124036--124083
11
4.5
11
77
15
55
79
16
4
0
0.89
124032--124074
6
7.3
6
85
15
54
81
16
2
0
0.79
124032--124083
22
2.4
21
84
9
61
78
17
3
0
0.89
127610--127634
6
4.2
6
100
0
50
16
16
32
36
1.90
141955--142109
77
2.0
77
92
3
258
29
8
14
47
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
142234--142270
11
2.9
14
76
23
53
43
24
10
21
1.84
143792--147847
331
12.4
333
82
6
3304
32
15
16
35
1.90
143767--147847
661
6.2
661
80
7
3219
32
15
16
35
1.90
145683--147847
991
2.2
992
86
2
3057
33
16
15
34
1.91

Tables:   1

The End!