Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014332.1 Corchorus olitorius cultivar O-4 contig14365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86000

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5613--6003
196
2.0
196
99
0
773
24
24
17
33
1.96
8464--8533
36
1.9
36
94
0
122
25
24
24
25
2.00
8467--8543
36
2.1
36
87
0
109
27
23
24
24
2.00
16340--16700
124
2.9
124
83
4
460
25
25
24
24
2.00
18619--19266
322
2.0
325
94
2
1131
29
19
22
28
1.98
18608--19269
162
4.1
162
93
1
1121
30
19
22
28
1.98
21661--21713
18
2.9
18
88
0
79
35
28
22
13
1.92
27849--27927
27
2.9
27
90
0
122
34
25
24
16
1.95
30286--30393
53
2.0
53
100
0
216
30
14
17
37
1.90
30359--30422
30
2.1
30
97
0
119
26
20
23
29
1.99
37629--37690
31
2.0
31
100
0
124
61
16
3
19
1.48
37636--37697
31
2.1
28
85
11
81
61
17
1
19
1.43
37839--37870
14
2.3
14
94
0
55
25
0
0
75
0.81
44088--44121
1
34.0
1
100
0
68
0
0
0
100
0.00
50858--50912
26
2.0
27
86
10
76
49
27
10
12
1.74
53005--53240
22
10.5
22
72
11
140
38
16
12
31
1.86
53004--53355
22
15.6
22
68
11
115
36
17
11
34
1.86
53516--53615
22
4.5
22
74
7
87
35
15
11
39
1.82
53516--53617
44
2.3
44
84
3
125
34
14
11
39
1.83
54901--55215
170
1.8
172
80
8
383
31
17
17
33
1.94
55334--55375
22
1.9
22
85
9
59
40
14
9
35
1.78
55339--55679
22
15.3
21
70
15
116
37
18
10
33
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55344--55580
87
2.7
85
78
12
239
39
17
10
32
1.84
55366--55833
22
21.2
22
67
13
104
35
18
11
35
1.86
55339--55833
44
11.2
44
69
13
169
35
18
11
34
1.86
56575--56628
6
8.7
6
87
4
72
3
0
14
81
0.82
56582--56639
12
4.8
12
83
10
64
3
0
12
84
0.74
56593--56636
7
6.6
7
94
2
65
2
0
11
86
0.66
72062--72111
22
2.3
22
78
0
55
54
10
16
20
1.70
85123--85158
19
1.9
18
88
5
54
33
22
2
41
1.68
85123--85169
11
4.7
10
80
17
53
31
21
6
40
1.78
85487--85559
26
2.7
27
80
4
85
19
12
26
42
1.86

Tables:   1

The End!