Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014436.1 Corchorus olitorius cultivar O-4 contig14469, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42260

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
417--454
11
3.5
11
79
13
51
65
15
2
15
1.38
430--488
5
11.6
5
82
10
66
66
15
1
16
1.34
420--488
15
4.9
14
75
15
54
65
15
1
17
1.35
419--477
25
2.3
25
82
11
75
66
15
1
16
1.34
418--488
10
6.8
11
78
15
80
66
15
1
16
1.33
771--799
1
29.0
1
100
0
58
100
0
0
0
0.00
1065--1218
48
3.1
48
86
3
218
32
16
11
38
1.85
1073--1220
50
3.0
50
88
2
219
32
16
12
37
1.87
1891--2298
50
8.1
50
93
0
690
31
29
12
26
1.93
11239--11313
27
2.8
27
87
2
107
37
25
20
17
1.94
13603--13640
19
2.0
20
84
5
51
26
10
23
39
1.87
22385--22500
48
2.4
48
91
4
178
19
54
11
14
1.70
22457--22527
33
2.2
33
79
5
81
19
47
14
18
1.82
28247--28276
1
30.0
1
100
0
60
100
0
0
0
0.00
29099--29136
15
2.5
15
100
0
76
5
39
23
31
1.77
40345--40416
31
2.3
31
85
0
99
37
19
16
26
1.93
40821--41043
60
3.7
60
93
1
358
34
18
19
27
1.95
40817--41042
31
7.5
30
66
17
112
34
18
19
27
1.95
40912--41011
29
3.4
29
71
15
105
34
18
20
28
1.95
41090--41246
60
2.6
60
86
3
219
28
19
19
33
1.96
41149--41249
31
3.3
31
70
13
102
26
17
22
32
1.97
41936--42007
31
2.3
31
87
0
108
37
20
16
25
1.93

Tables:   1

The End!