Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014499.1 Corchorus olitorius cultivar O-4 contig14532, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45921

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--383
30
12.7
30
91
1
540
28
21
22
28
1.99
1895--1952
22
2.6
22
78
10
64
39
15
5
39
1.70
1926--1998
22
3.3
22
78
3
67
34
20
10
34
1.88
2032--2207
22
7.8
22
70
11
115
35
18
9
36
1.83
2136--2225
44
2.1
42
85
4
117
40
18
11
30
1.86
3053--3091
20
2.0
20
94
0
69
41
15
5
38
1.69
3094--3237
20
6.9
22
66
16
74
40
18
9
31
1.83
3264--3484
22
10.1
22
73
7
164
32
15
9
42
1.79
3305--3353
21
2.3
22
85
3
64
26
22
12
38
1.89
7406--7546
49
2.9
47
78
11
160
28
15
5
50
1.67
7605--7650
5
9.6
5
90
9
78
58
0
19
21
1.39
15584--15679
46
2.1
45
83
9
115
33
10
23
32
1.89
15939--16017
22
3.5
22
73
10
70
44
6
15
34
1.71
16161--16203
22
2.0
21
86
13
61
41
0
0
58
0.98
20396--20424
15
2.0
15
93
6
51
68
0
0
31
0.89
20685--20740
29
2.0
28
92
3
94
39
21
10
28
1.87
40558--40638
25
3.5
25
72
19
93
24
11
0
64
1.26
40581--40618
19
2.1
18
90
5
58
26
10
0
63
1.27
40560--40695
44
3.0
44
88
4
191
24
11
0
63
1.31
40714--40782
8
8.8
8
71
7
52
21
13
2
62
1.44
40714--40769
24
2.3
24
87
6
78
23
16
3
57
1.55
44931--45074
49
2.9
50
83
5
184
39
14
16
29
1.88

Tables:   1

The End!