Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014570.1 Corchorus olitorius cultivar O-4 contig14603, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169076

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--20054
334
60.1
334
87
3
27115
31
15
16
35
1.91
4997--5057
28
2.2
28
96
0
113
13
22
22
40
1.89
26882--26929
23
2.1
23
100
0
96
31
18
16
33
1.94
28123--28199
28
2.6
30
79
8
95
44
14
20
20
1.86
32062--32140
30
2.6
30
95
0
140
24
17
12
45
1.83
32270--32344
29
2.5
30
80
8
91
45
17
18
18
1.86
34215--34254
20
2.0
21
95
5
73
45
0
10
45
1.37
34212--34263
18
2.8
18
79
20
63
44
0
11
44
1.40
37823--37910
46
2.0
45
89
8
137
54
9
7
28
1.60
39699--39753
22
2.5
22
87
0
83
40
9
21
29
1.84
50385--50444
30
2.0
30
93
0
102
33
30
18
18
1.95
52964--53055
33
2.8
33
89
0
157
32
22
23
20
1.98
54494--54540
22
2.3
20
85
10
60
55
8
19
17
1.67
56409--56580
86
2.0
86
100
0
344
45
20
15
18
1.85
59215--59522
85
3.6
85
95
0
564
46
16
11
26
1.80
62362--62441
41
1.9
42
97
2
153
31
38
11
18
1.86
69042--69071
14
2.1
14
100
0
60
43
33
0
23
1.54
69852--70434
291
2.0
291
98
0
1139
37
14
22
25
1.92
73259--75620
651
3.7
648
88
5
3378
41
22
16
18
1.90
75950--78375
652
3.8
650
86
6
3439
40
22
18
18
1.91
83653--83706
28
1.9
28
96
0
99
51
11
29
7
1.64
84823--84894
29
2.4
30
84
9
94
30
25
12
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84872--84944
31
2.4
31
81
9
87
27
21
13
36
1.92
85191--85267
29
2.6
30
81
6
102
29
11
27
31
1.92
95750--95929
89
2.0
89
100
0
360
33
11
12
42
1.78
97384--97410
12
2.2
12
100
0
54
48
33
18
0
1.49
101065--101229
60
2.8
60
83
1
197
38
13
16
30
1.88
101266--101429
60
2.7
60
81
1
186
31
18
14
35
1.91
103023--103149
45
3.0
41
79
11
125
39
29
18
12
1.87
103012--103115
45
2.3
45
94
0
190
41
27
18
12
1.86
133515--133966
72
6.3
71
68
7
178
42
8
31
17
1.79
135475--135524
24
2.1
24
100
0
100
44
12
34
10
1.75
135930--136024
48
2.0
48
87
4
138
26
14
20
38
1.91
155217--155299
42
2.0
42
92
0
139
27
32
14
25
1.95
155236--155299
21
3.0
21
68
8
58
29
32
12
25
1.92
156269--156300
16
2.0
16
93
0
55
18
28
6
46
1.73
156345--156389
23
2.0
23
90
0
72
31
22
15
31
1.95
162911--169066
332
18.6
330
78
7
4567
32
15
17
35
1.91
166653--169024
323
7.2
318
84
6
2596
30
16
17
35
1.92
162943--169076
665
9.3
651
77
9
3237
31
15
17
35
1.91

Tables:   1

The End!