Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014579.1 Corchorus olitorius cultivar O-4 contig14612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51830

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7178--7209
2
16.0
2
100
0
64
50
0
0
50
1.00
11480--11526
25
1.9
24
95
4
85
29
6
8
55
1.55
17922--18004
33
2.5
33
94
3
141
55
13
12
19
1.68
26873--26951
30
2.5
31
77
6
79
31
32
8
26
1.87
33861--33958
32
3.1
32
92
0
160
34
13
12
39
1.82
37293--37543
122
2.0
127
88
8
379
38
10
1
49
1.47
42425--42504
39
2.1
39
97
0
151
32
15
30
22
1.94
45797--47075
320
4.0
322
80
7
1393
33
14
16
35
1.89
47401--50575
322
9.8
320
86
5
4009
33
15
16
35
1.90
47402--51821
956
4.6
963
87
5
5970
33
15
16
35
1.90
47401--51821
323
13.8
321
80
9
4463
33
15
16
35
1.90

Tables:   1

The End!