Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014581.1 Corchorus olitorius cultivar O-4 contig14614, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132496

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
152--203
25
2.1
24
89
3
77
61
3
5
28
1.37
16351--16375
3
8.3
3
100
0
50
32
0
0
68
0.90
52360--52389
2
15.0
2
100
0
60
50
50
0
0
1.00
52452--52756
155
2.0
155
98
0
583
35
17
18
28
1.94
56843--56868
7
3.7
7
100
0
52
88
0
0
11
0.52
60673--60707
18
1.9
18
88
0
52
28
14
37
20
1.91
62304--62341
11
3.5
11
89
10
51
39
0
2
57
1.12
62632--62669
3
13.0
3
94
5
69
65
0
0
34
0.93
66921--67051
66
2.0
66
98
0
253
34
9
6
49
1.61
67162--67194
12
2.6
13
85
9
50
12
0
18
69
1.18
74278--74307
2
15.0
2
100
0
60
50
0
0
50
1.00
74766--74802
2
19.0
2
94
5
67
48
0
0
51
1.00
75405--75460
30
1.9
29
86
13
80
46
7
12
33
1.69
76589--76634
2
23.0
2
100
0
92
50
0
0
50
1.00
76903--76940
18
2.1
18
85
9
51
57
2
0
39
1.12
84030--84063
2
17.0
2
100
0
68
50
0
0
50
1.00
101195--101231
17
2.2
17
90
0
56
35
18
13
32
1.90
102313--102430
62
1.9
62
96
0
218
27
13
22
36
1.92
102540--102625
43
2.0
43
86
4
120
31
31
12
24
1.93
103456--103498
22
1.9
23
85
4
61
62
9
9
18
1.51
104208--104244
13
2.8
13
87
0
56
16
43
8
32
1.77
104243--104323
41
2.0
41
90
0
126
41
17
12
28
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104427--104451
13
1.9
13
100
0
50
32
8
40
20
1.81
112129--112155
14
1.9
14
100
0
54
44
14
11
29
1.80
118469--118493
2
12.5
2
100
0
50
48
0
0
52
1.00
118594--123435
331
14.5
329
79
8
3783
36
15
15
33
1.88
118642--123442
997
4.8
993
79
8
3991
36
14
15
33
1.88
123387--123494
52
2.1
52
87
3
155
46
12
11
29
1.77
123708--126644
331
9.0
331
82
6
3278
35
15
16
33
1.89
123708--132493
333
26.1
331
77
9
7410
35
15
16
32
1.90
123708--132496
995
8.7
979
79
9
7986
35
15
16
32
1.90
126589--126696
52
2.1
52
94
0
189
48
12
10
28
1.74
128253--132493
332
12.8
332
87
2
5996
35
15
16
32
1.90

Tables:   1

The End!