Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014588.1 Corchorus olitorius cultivar O-4 contig14621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97807

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
788--826
13
3.0
13
85
7
53
51
23
10
15
1.73
788--822
13
2.6
14
90
4
54
45
25
11
17
1.81
7109--7154
23
2.0
23
100
0
92
52
8
8
30
1.62
16618--16898
129
2.2
129
84
2
359
21
27
15
35
1.93
16849--16878
15
2.0
15
93
0
51
20
30
6
43
1.77
16839--17067
96
2.4
93
89
5
361
17
33
13
35
1.89
20584--20647
21
3.2
20
80
8
76
34
18
10
35
1.86
32737--32761
8
3.1
8
100
0
50
12
24
24
40
1.88
36407--36465
31
1.9
31
86
6
84
33
13
15
37
1.86
37689--37726
11
3.5
11
85
10
51
57
2
0
39
1.12
40743--40921
24
7.5
24
88
2
261
15
37
22
24
1.92
40999--41103
24
4.5
23
76
11
90
13
29
21
35
1.92
52290--52329
14
2.8
14
85
14
55
55
2
0
42
1.13
52396--52457
17
3.9
16
83
12
67
41
0
6
51
1.27
52396--52457
2
33.0
2
74
18
53
41
0
6
51
1.27
53630--53730
49
2.1
49
100
0
202
26
13
21
37
1.91
54940--55017
39
2.0
39
100
0
156
25
20
15
38
1.92
64154--64180
13
2.1
13
100
0
54
22
22
22
33
1.97
67612--67667
29
2.0
28
92
3
94
28
10
21
39
1.87
85256--85297
16
2.5
17
85
14
61
16
0
0
83
0.65
85259--85295
12
3.0
12
92
4
56
13
0
0
86
0.57
88603--88691
29
3.1
29
98
0
169
12
21
17
48
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96775--97807
332
3.2
328
84
5
1283
36
16
14
32
1.89

Tables:   1

The End!