Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014647.1 Corchorus olitorius cultivar O-4 contig14680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155469

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3193--3222
1
30.0
1
100
0
60
100
0
0
0
0.00
3333--3411
39
2.0
39
100
0
158
37
25
18
17
1.93
3810--3853
22
2.0
23
86
4
63
4
20
0
75
0.98
3810--3848
11
3.5
11
80
13
53
2
17
0
79
0.84
16831--16873
18
2.4
18
100
0
86
46
11
34
6
1.67
27013--27038
13
2.0
13
100
0
52
53
7
0
38
1.30
30922--31037
59
2.0
59
98
0
223
30
12
17
40
1.86
42277--42354
29
2.6
28
78
9
93
17
21
16
43
1.88
42414--42491
32
2.4
32
83
8
88
25
33
24
16
1.96
44689--44746
21
2.7
22
83
5
82
43
8
15
32
1.77
45553--45620
34
2.0
34
100
0
136
41
0
14
44
1.45
46260--46292
3
11.3
3
87
6
50
63
0
3
33
1.10
49241--49277
19
1.9
19
88
0
56
45
13
27
13
1.81
57402--57511
54
2.0
54
96
0
202
21
30
22
24
1.99
57510--57605
48
2.0
48
100
0
192
37
12
12
37
1.81
57630--57695
33
2.0
33
96
0
123
39
7
37
15
1.75
57808--57870
31
2.0
31
96
0
117
38
38
11
12
1.79
57840--57888
23
2.1
23
96
0
89
30
38
14
16
1.88
84770--84795
7
3.7
7
100
0
52
42
15
42
0
1.47
101687--101981
150
2.0
150
97
0
563
36
15
15
32
1.89
106341--106377
19
1.9
19
88
0
56
40
13
16
29
1.86
112879--113230
176
2.0
176
98
0
686
35
20
18
25
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121235--121267
16
2.1
16
100
0
66
18
18
6
57
1.60
130474--130569
44
2.2
44
98
0
183
11
12
36
39
1.79
144905--145073
84
2.0
84
98
0
329
35
16
15
31
1.91

Tables:   1

The End!