Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014656.1 Corchorus olitorius cultivar O-4 contig14689, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69649

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
313--358
20
2.2
21
80
3
58
17
10
19
52
1.74
326--357
10
3.1
10
95
4
55
12
9
21
56
1.64
1020--3032
332
6.1
332
92
0
3127
33
16
16
33
1.91
16193--16224
11
2.8
12
90
9
57
0
15
0
84
0.63
16198--16227
16
1.9
15
93
6
51
0
13
0
86
0.57
22043--22113
6
11.8
6
98
0
124
12
33
0
53
1.39
22127--22164
18
2.1
18
90
0
58
7
34
21
36
1.82
25436--25534
41
2.4
41
96
0
180
25
6
20
48
1.72
26808--26840
5
6.6
5
100
0
66
42
0
0
57
0.98
27280--27355
29
2.6
30
81
12
102
31
27
11
28
1.92
29929--29976
19
2.5
19
75
0
51
56
14
12
16
1.68
34330--34369
8
5.0
8
88
11
64
85
0
15
0
0.61
34330--34362
17
1.9
17
100
0
66
84
0
15
0
0.61
41360--41398
2
19.0
2
94
5
69
48
0
2
48
1.15
56594--56665
36
2.0
36
97
0
135
43
16
6
33
1.75
59155--59617
153
3.0
153
91
0
757
23
23
15
37
1.93
60839--60873
14
2.5
14
85
0
52
80
0
14
5
0.89

Tables:   1

The End!