Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014667.1 Corchorus olitorius cultivar O-4 contig14700, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54314

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9498--9599
12
9.2
11
82
15
97
54
0
0
45
0.99
9501--9599
5
19.0
5
82
14
96
55
0
0
44
0.99
9513--9600
8
10.4
8
83
10
88
56
0
0
43
0.99
10001--10057
2
28.0
2
80
16
64
49
0
7
43
1.29
13798--13850
28
2.0
27
88
7
81
11
26
7
54
1.62
14066--14115
2
27.5
2
81
18
65
52
0
0
48
1.00
14081--14138
30
2.0
29
83
9
75
50
1
5
43
1.35
15216--15307
22
4.3
21
79
5
87
44
4
4
46
1.43
15389--15440
22
2.4
22
77
6
61
42
15
7
34
1.75
15402--15516
46
2.6
44
78
8
124
41
12
10
35
1.77
15527--15670
22
6.6
21
75
14
94
36
15
6
41
1.74
15625--15665
21
1.9
22
90
5
66
31
21
4
41
1.74
15780--15853
22
3.4
22
74
10
71
41
10
8
39
1.70
15775--15880
22
4.9
22
68
16
69
40
12
7
39
1.71
15896--16025
22
6.0
22
77
4
86
38
14
9
37
1.78
16086--16328
22
10.8
22
71
7
150
37
16
9
37
1.80
16157--16252
49
2.0
48
87
6
140
38
15
7
38
1.75
16206--16260
21
2.5
22
85
2
67
38
16
10
34
1.84
16091--16320
115
2.0
115
78
6
243
36
16
8
37
1.80
16734--16777
23
1.9
23
81
9
54
25
15
0
59
1.37
21574--21608
15
2.3
15
90
9
54
74
0
0
25
0.82
25928--25961
17
2.0
17
88
0
50
44
2
2
50
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27159--27203
8
5.4
9
89
10
62
48
8
0
42
1.34
38561--38747
98
1.9
100
91
3
306
36
16
11
35
1.84
40195--40294
29
3.4
29
70
15
87
28
22
17
33
1.96
40163--40296
60
2.2
60
90
0
205
27
21
16
34
1.95
40162--40265
31
3.4
31
68
15
90
25
21
16
36
1.94
40846--40890
21
2.1
21
83
0
54
20
4
4
71
1.21
40905--41019
54
2.1
54
95
0
203
24
18
13
43
1.86
41169--41205
17
2.2
17
90
0
56
8
2
5
83
0.88
43867--43907
21
1.9
22
90
5
66
24
21
9
43
1.83
45770--45805
5
7.8
5
82
17
51
0
0
22
77
0.76
45770--45805
9
4.0
9
100
0
72
0
0
22
77
0.76
49414--49447
15
2.3
15
90
10
52
52
5
8
32
1.56
49414--49448
16
2.3
15
85
5
52
54
5
8
31
1.54
51057--51131
27
2.8
27
95
0
132
18
17
22
41
1.90
51180--51220
20
2.0
21
85
4
57
29
17
12
41
1.85
51144--51257
57
2.0
57
86
6
160
21
19
17
42
1.90
51111--51279
94
1.8
91
83
3
221
20
19
17
42
1.89
51202--51584
36
10.4
36
77
8
297
19
17
19
44
1.87
51200--51545
111
3.1
112
87
3
450
19
17
19
44
1.87
51838--52289
30
15.0
30
93
1
764
20
13
16
48
1.80
54035--54075
21
1.9
22
95
5
75
21
24
9
43
1.83
54036--54081
21
2.2
21
84
7
58
26
19
10
43
1.84

Tables:   1

The End!