Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014719.1 Corchorus olitorius cultivar O-4 contig14752, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142671

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
213--322
31
3.6
31
82
2
125
40
10
16
31
1.83
434--500
31
2.2
31
92
5
111
20
19
11
47
1.81
4222--4261
3
13.0
3
84
5
53
27
0
2
70
1.01
4219--4257
12
3.2
12
88
0
60
23
0
2
74
0.94
5698--5730
17
1.9
17
93
0
57
24
24
18
33
1.97
5705--5745
17
2.4
17
87
0
55
26
17
17
39
1.91
7970--8005
17
2.1
17
100
0
72
16
16
44
22
1.86
20383--20440
21
2.9
19
84
5
71
31
22
10
36
1.88
21835--21900
32
2.1
32
100
0
132
40
12
9
37
1.74
25616--25666
21
2.6
19
78
6
57
29
21
9
39
1.85
25830--25873
19
2.3
19
96
0
79
40
15
27
15
1.88
54031--54067
19
1.9
19
94
0
65
37
13
13
35
1.84
61034--61076
18
2.4
18
84
7
52
69
4
23
2
1.18
65926--65972
23
2.0
23
95
0
85
36
14
12
36
1.85
66235--66291
27
2.1
27
100
0
114
36
21
12
29
1.90
66329--66361
16
2.1
16
100
0
66
30
18
6
45
1.73
71199--71337
63
2.2
64
83
3
165
28
8
23
39
1.84
88617--88651
18
1.9
18
88
0
52
34
2
31
31
1.73
89843--89876
1
34.0
1
93
0
59
0
0
2
97
0.19
105143--105167
2
12.5
2
100
0
50
48
0
0
52
1.00
107399--107443
23
2.0
23
91
4
74
57
0
13
28
1.36
110734--110761
11
2.5
11
100
0
56
85
0
14
0
0.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117328--117357
2
15.0
2
92
0
51
50
3
0
46
1.18
123244--123282
19
2.1
19
95
0
69
17
15
15
51
1.77
123632--123764
68
2.0
66
86
2
185
36
20
9
34
1.84
125479--125521
22
2.0
20
82
8
50
41
6
2
48
1.43
127157--127187
11
2.8
11
90
0
53
38
0
32
29
1.57
128823--130024
319
3.7
315
79
9
1047
36
15
13
34
1.87
131220--133648
322
7.4
319
78
6
2399
35
16
14
33
1.89
131349--133592
654
3.4
638
81
7
2206
35
16
14
34
1.89
133771--136852
320
9.5
322
82
6
3442
35
16
14
33
1.89
136920--142671
323
17.8
322
80
7
5973
35
16
14
33
1.90

Tables:   1

The End!