Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014737.1 Corchorus olitorius cultivar O-4 contig14770, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26504

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74--2452
332
7.3
330
77
7
2047
36
15
14
33
1.88
2515--3336
333
2.5
331
90
3
1266
32
15
16
36
1.90
3146--3523
187
2.0
186
85
3
510
29
19
15
36
1.92
3333--7815
332
13.5
333
86
3
5993
32
15
16
35
1.90
3333--7815
662
6.8
663
88
3
6049
32
15
16
35
1.90
7819--10714
987
2.9
972
81
5
3304
35
15
15
33
1.89
14279--14326
24
2.1
22
88
11
71
39
18
12
29
1.88
15121--15184
2
31.5
2
81
9
76
46
1
46
4
1.33
16262--16339
31
2.5
31
89
2
122
39
21
24
14
1.90
20255--20330
34
2.2
34
100
0
152
23
30
9
36
1.86
22316--22352
18
2.1
18
89
0
56
27
5
40
27
1.78
25262--25303
19
2.2
19
83
8
50
42
4
2
50
1.36

Tables:   1

The End!