genome.fa.s14881.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014881.1 Corchorus olitorius cultivar O-4 contig14914, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47032

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323--368	25	1.9	25	86	8	69	21	32	6	39	1.79
793--975	35	5.3	35	86	3	246	39	18	12	29	1.88
924--1031	56	1.9	56	94	0	189	37	17	17	26	1.92
980--1104	35	3.6	35	86	0	169	37	19	16	26	1.93
856--1230	126	3.0	126	88	1	567	38	18	15	27	1.91
1084--1125	21	2.0	21	90	0	66	28	19	23	28	1.98
1014--1295	105	2.9	91	83	7	267	38	19	15	25	1.92
1105--1314	35	6.0	35	92	1	323	39	19	14	26	1.91
1289--1853	54	10.5	54	83	6	438	34	22	17	26	1.96
9360--9484	65	2.0	62	85	4	169	38	15	23	23	1.92
10345--10383	2	19.5	2	100	0	78	51	0	0	48	1.00
21705--21750	20	2.2	22	88	7	69	26	13	4	56	1.55
21925--22951	51	19.2	52	81	11	509	29	20	1	48	1.58
22007--22099	19	5.1	19	69	21	65	33	23	0	43	1.54
22016--22727	54	13.2	54	81	8	408	30	20	1	47	1.58
22016--22340	108	3.0	106	89	4	456	32	21	1	44	1.63
21925--22983	26	39.6	25	72	16	618	29	20	1	48	1.58
22395--22504	35	3.5	35	72	25	134	30	20	0	50	1.49
22354--22589	59	4.1	60	84	11	339	30	20	0	48	1.55
22681--22806	35	3.9	35	75	19	155	31	19	0	48	1.50
22776--22984	102	2.0	102	87	1	303	25	19	2	52	1.60
26601--26705	54	1.9	54	98	0	201	25	22	9	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30087--30170	33	2.5	33	78	5	89	13	32	35	19	1.90
31467--31514	19	2.5	19	83	10	62	35	2	4	58	1.29
37718--37744	9	3.0	9	100	0	54	22	55	11	11	1.66
38253--38304	27	2.0	27	85	11	72	44	0	23	32	1.54
38480--38527	21	2.3	21	100	0	96	29	12	0	58	1.35
40943--41000	24	2.4	24	85	0	80	24	41	10	24	1.86

Tables:   1

The End!