Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014908.1 Corchorus olitorius cultivar O-4 contig14941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97911

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2274--2312
17
2.4
16
83
16
53
2
15
2
79
0.95
2288--2319
11
2.9
11
95
0
55
0
12
0
87
0.54
3632--9639
332
18.2
333
84
4
6040
31
15
16
35
1.91
3632--9639
663
9.1
660
83
5
6002
31
15
16
35
1.91
9755--12149
328
7.4
327
77
8
2073
33
14
16
35
1.89
17221--17250
2
14.5
2
93
6
51
46
0
3
50
1.18
44188--44266
39
2.0
39
100
0
158
44
17
17
20
1.87
65584--65631
25
1.9
25
95
0
87
50
10
27
12
1.73
71913--71940
6
4.7
6
100
0
56
17
0
0
82
0.68
80225--80251
13
2.1
13
100
0
54
62
29
7
0
1.22
83379--83415
19
1.9
19
94
0
65
16
24
13
45
1.83
91319--91420
45
2.3
45
92
0
177
26
23
20
29
1.99
92321--92719
62
6.3
62
89
7
597
3
39
22
34
1.70
92701--92739
20
2.0
20
90
9
64
0
41
10
48
1.37
92564--92801
80
3.0
80
93
4
405
2
39
20
37
1.66
94501--97904
966
3.5
969
90
2
5099
35
16
15
32
1.90
94501--97911
649
5.3
639
80
7
3444
35
16
15
32
1.90

Tables:   1

The End!