Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014922.1 Corchorus olitorius cultivar O-4 contig14955, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107687

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3157--3186
15
2.0
15
93
0
51
53
3
43
0
1.17
4099--4194
48
2.0
48
97
0
183
28
10
28
33
1.90
4190--4297
56
1.9
56
83
7
139
35
7
26
30
1.84
5559--5952
195
2.0
197
94
1
693
27
15
18
38
1.91
11936--11977
18
2.3
18
84
8
59
52
26
4
16
1.63
22387--22422
18
1.9
19
88
5
56
19
11
16
52
1.73
32926--32950
3
8.3
3
100
0
50
0
36
0
64
0.94
34980--35026
2
23.5
2
87
8
69
46
0
2
51
1.13
34989--35028
21
1.9
21
100
0
80
42
0
2
55
1.13
43952--43986
6
5.8
6
86
0
52
45
14
37
2
1.59
65360--65391
1
32.0
1
100
0
64
0
0
0
100
0.00
82798--82827
4
7.5
4
100
0
60
0
26
0
73
0.84
84422--84449
12
2.3
12
100
0
56
57
10
0
32
1.33
84456--84582
64
2.0
66
96
3
240
29
22
15
31
1.95
90069--90224
78
2.0
78
96
0
285
14
20
19
45
1.85
94050--94084
16
2.2
16
100
0
70
42
11
17
28
1.83
94166--94210
23
1.9
24
86
4
65
11
13
4
71
1.29
96888--97354
50
9.4
50
91
1
715
36
19
19
24
1.95
96889--97354
197
2.3
200
89
2
722
36
19
19
24
1.95
100380--100414
9
3.8
9
92
7
61
0
17
0
82
0.66
100379--100415
10
3.8
10
92
7
67
0
16
0
83
0.64
100828--101184
40
9.0
41
95
4
626
31
7
29
31
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100828--101184
81
4.5
82
94
5
626
31
7
29
31
1.85
103758--103847
44
2.2
41
81
13
107
31
14
17
36
1.90
104037--105362
330
4.0
330
86
3
1898
34
16
14
34
1.89
105364--107687
334
7.0
332
88
3
3215
35
17
14
32
1.90

Tables:   1

The End!