Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014928.1 Corchorus olitorius cultivar O-4 contig14961, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122413

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
602--628
2
13.5
2
100
0
54
51
0
0
48
1.00
10937--10989
26
2.0
26
85
7
72
37
0
13
49
1.42
29675--29736
32
2.0
32
90
3
99
46
17
12
22
1.82
32317--32350
1
34.0
1
93
0
59
0
0
2
97
0.19
50104--50145
20
2.1
20
91
8
68
28
16
14
40
1.88
50130--50188
15
4.2
15
72
24
65
27
13
20
38
1.90
50145--51328
26
45.2
26
90
6
1616
26
15
25
32
1.95
51409--51954
272
2.0
271
88
2
810
33
15
17
34
1.91
51679--58107
323
20.1
322
87
3
8867
32
15
16
34
1.91
51682--58431
966
7.1
965
88
3
9085
32
15
16
34
1.91
59706--59758
25
2.1
26
96
3
99
49
11
7
32
1.67
66347--66478
64
2.1
64
87
4
187
33
9
20
36
1.86
66523--66562
20
2.0
20
85
4
55
15
20
5
60
1.53
73192--73306
58
2.0
58
94
0
203
26
22
19
31
1.98
75867--75940
40
1.9
37
89
10
114
28
9
20
41
1.83
79635--79740
53
2.0
53
96
0
194
41
5
22
30
1.77
95118--95168
22
2.3
23
90
10
88
15
15
11
56
1.66
98454--98503
19
2.6
19
74
22
59
30
26
8
36
1.85
104146--104180
6
5.8
6
100
0
70
0
51
0
48
1.00
105561--105590
14
2.2
13
94
5
51
43
13
0
43
1.43
121467--121491
4
6.2
4
100
0
50
24
0
0
76
0.80

Tables:   1

The End!