Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015074.1 Corchorus olitorius cultivar O-4 contig15107, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39473

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
965--1055
16
5.8
16
77
8
80
6
15
41
36
1.73
981--1055
32
2.3
32
97
0
141
6
16
42
34
1.74
1028--1107
22
3.6
22
71
18
76
2
20
48
28
1.62
1070--1106
5
7.0
5
90
6
56
0
21
56
21
1.42
1232--1278
13
3.8
12
78
13
51
55
4
0
40
1.19
1523--1566
21
2.1
21
100
0
88
47
9
0
43
1.35
1588--1659
31
2.3
31
75
17
78
61
8
4
26
1.43
1901--1929
2
14.5
2
100
0
58
48
0
0
51
1.00
1981--2038
26
2.4
22
76
21
53
41
1
1
55
1.20
2105--2152
22
2.2
21
85
3
60
4
14
50
31
1.62
8079--8116
20
1.9
20
94
0
67
31
23
5
39
1.77
9365--9391
10
2.7
10
100
0
54
29
0
18
51
1.46
9823--9849
2
13.5
2
100
0
54
51
0
0
48
1.00
14279--14313
17
2.1
17
100
0
70
40
20
17
22
1.92
15055--15081
6
4.5
6
100
0
54
85
0
14
0
0.61
18076--18148
29
2.6
29
87
8
98
35
5
15
43
1.69
23202--23329
32
3.9
32
76
4
130
36
14
14
35
1.86
23203--23417
66
3.4
62
84
5
245
34
16
15
33
1.91
23274--23655
30
12.7
30
88
1
487
30
20
19
29
1.97
24992--25029
16
2.2
18
86
9
53
55
0
2
42
1.14
26768--26799
16
1.9
17
93
6
57
68
0
21
9
1.17
29545--29607
31
2.0
31
96
0
117
41
7
9
41
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35886--35991
3
35.3
3
100
0
212
33
0
0
66
0.92
37123--37153
15
2.1
15
93
0
53
38
19
32
9
1.84
37862--37935
38
1.9
38
97
0
139
40
6
9
43
1.64
38617--38652
19
1.9
18
88
5
54
41
8
22
27
1.82

Tables:   1

The End!